RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 MINOS1Q5TGZ0 78 aa9.57□□□□□ -0.88
SQSTM1-206ENST00000466342 LHFPL4Q7Z7J7 247 aa9.57□□□□□ -0.88
SQSTM1-206ENST00000466342 SAMD12Q8N8I0 201 aa9.57□□□□□ -0.88
SQSTM1-206ENST00000466342 DTX3Q8N9I9 347 aa9.57□□□□□ -0.88
SQSTM1-206ENST00000466342 OR4P4Q8NGL7 312 aa9.57□□□□□ -0.88
SQSTM1-206ENST00000466342 OR9G1Q8NH87 305 aa9.57□□□□□ -0.88
SQSTM1-206ENST00000466342 C17orf50Q8WW18 174 aa9.57□□□□□ -0.88
SQSTM1-206ENST00000466342 CFHR4Q92496 578 aa9.57□□□□□ -0.88
SQSTM1-206ENST00000466342 Q9N2K0 584 aa9.57□□□□□ -0.88
SQSTM1-206ENST00000466342 DIABLOQ9NR28 239 aa9.57□□□□□ -0.88
SQSTM1-206ENST00000466342 GFOD1Q9NXC2 390 aa9.57□□□□□ -0.88
SQSTM1-206ENST00000466342 MINOS1-NBL1R4GNA1 71 aa9.57□□□□□ -0.88
SQSTM1-206ENST00000466342 IGHV3-43A0A0B4J1X8 118 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 TMEM235A6NFC5 223 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 H3BUX3 64 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 J3QR06 171 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 FCGR3AP08637 254 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 IGHV3-43DP0DP04 118 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 HTR1DP28221 377 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 SOX6P35712 828 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 PRRX1P54821 245 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 HLA-DRB3P79483 266 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 HTD2P86397 168 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 LRRC75BQ2VPJ9 315 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 Q3ZCU0 254 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 CDNFQ49AH0 187 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 LDLRAD2Q5SZI1 272 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 HACD4Q5VWC8 232 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 MZT2AQ6P582 158 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 DYNC2LI1Q8TCX1 351 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 LEAP2Q969E1 77 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 MALSU1Q96EH3 234 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 S100A16Q96FQ6 103 aaKnown RBP9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 CMTM3Q96MX0 182 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 RBM38Q9H0Z9 239 aaKnown RBP9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 MMP28Q9H239 520 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 RAB18Q9NP72 206 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 COMMD3Q9UBI1 195 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 GNG12Q9UBI6 72 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 JPT1Q9UK76 154 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 ELF5Q9UKW6 265 aaPredicted RBP9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 PSG11Q9UQ72 335 aa9.56□□□□□ -0.88
SQSTM1-206ENST00000466342 TRAV18A0A075B6X5 111 aa9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 CCDC160A6NGH7 325 aa9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 BUB1B-PAK6H3BSN5 160 aa9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 XRCC3O43542 346 aa9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 IGHV3-7P01780 117 aa9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 APOA1P02647 267 aa9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 DTYMKP23919 212 aa9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 TALDO1P37837 337 aa9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 KIR2DS4P43632 304 aa9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 GNG10P50151 68 aa9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 GNG2P59768 71 aa9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 PITPNAQ00169 270 aa9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 SRSF7Q16629 238 aaKnown RBP eCLIP9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 PNLIPRP3Q17RR3 467 aa9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 LIAT1Q6ZQX7 453 aa9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 C5orf24Q7Z6I8 188 aa9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 C11orf44Q8N8P7 122 aa9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 C8orf31Q8N9H6 132 aa9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 CREB3L1Q96BA8 519 aa9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 GALMQ96C23 342 aa9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 B9D2Q9BPU9 175 aa9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 OR2S2Q9NQN1 319 aa9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 CCDC59Q9P031 241 aaKnown RBP9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 DPM3Q9P2X0 92 aa9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 AMMECR1Q9Y4X0 333 aaPredicted RBP9.55□□□□□ -0.88
SQSTM1-206ENST00000466342 VGLL3A8MV65 326 aa9.54□□□□□ -0.88
SQSTM1-206ENST00000466342 LEUTXA8MZ59 168 aa9.54□□□□□ -0.88
SQSTM1-206ENST00000466342 TRDCB7Z8K6 153 aa9.54□□□□□ -0.88
SQSTM1-206ENST00000466342 ZNF701M0R085 212 aaPredicted RBP9.54□□□□□ -0.88
SQSTM1-206ENST00000466342 HPGDSO60760 199 aa9.54□□□□□ -0.88
SQSTM1-206ENST00000466342 EIF4EP06730 217 aaKnown RBP9.54□□□□□ -0.88
SQSTM1-206ENST00000466342 SCTP09683 121 aa9.54□□□□□ -0.88
SQSTM1-206ENST00000466342 CEACAM3P40198 252 aa9.54□□□□□ -0.88
SQSTM1-206ENST00000466342 GNMTQ14749 295 aa9.54□□□□□ -0.88
SQSTM1-206ENST00000466342 KIR2DS1Q14954 304 aa9.54□□□□□ -0.88
SQSTM1-206ENST00000466342 SSX2Q16385 188 aa9.54□□□□□ -0.88
SQSTM1-206ENST00000466342 MORN2Q502X0 79 aa9.54□□□□□ -0.88
SQSTM1-206ENST00000466342 STEAP3Q658P3 488 aa9.54□□□□□ -0.88
SQSTM1-206ENST00000466342 FAM53AQ6NSI3 398 aaPredicted RBP9.54□□□□□ -0.88
SQSTM1-206ENST00000466342 C11orf88Q6PI97 169 aa9.54□□□□□ -0.88
SQSTM1-206ENST00000466342 DYNAPQ8N1N2 210 aa9.54□□□□□ -0.88
SQSTM1-206ENST00000466342 LINC00311Q8N616 119 aa9.54□□□□□ -0.88
SQSTM1-206ENST00000466342 ZNF439Q8NDP4 499 aa9.54□□□□□ -0.88
SQSTM1-206ENST00000466342 OR52L2PQ8NGH6 319 aa9.54□□□□□ -0.88
SQSTM1-206ENST00000466342 PIFOQ8TCI5 191 aa9.54□□□□□ -0.88
SQSTM1-206ENST00000466342 NUDCD2Q8WVJ2 157 aa9.54□□□□□ -0.88
SQSTM1-206ENST00000466342 IL1F10Q8WWZ1 152 aa9.54□□□□□ -0.88
SQSTM1-206ENST00000466342 RANBP3Q9H6Z4 567 aaPredicted RBP9.54□□□□□ -0.88
SQSTM1-206ENST00000466342 HILPDAQ9Y5L2 63 aa9.54□□□□□ -0.88
SQSTM1-206ENST00000466342 A0A1W2PPE3 182 aa9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 OOSP1A8MZH6 123 aa9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 LY6LH3BQJ8 138 aa9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 FABP7O15540 132 aa9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 YPEL1O60688 119 aa9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 RGS11O94810 467 aa9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 ELK1P19419 428 aa9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 PAX6P26367 422 aa9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 PPP1CCP36873 323 aaKnown RBP9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms