RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 HSPA12AO43301 675 aa14.95□□□□□ -0.02
SHH-203ENST00000435425 FCGR3AP08637 254 aa14.95□□□□□ -0.02
SHH-203ENST00000435425 SRSF4Q08170 494 aaKnown RBP14.95□□□□□ -0.02
SHH-203ENST00000435425 ZNF816Q0VGE8 651 aaPredicted RBP14.95□□□□□ -0.02
SHH-203ENST00000435425 HNF4GQ14541 408 aa14.95□□□□□ -0.02
SHH-203ENST00000435425 CROCCP3Q8IVE0 287 aa14.95□□□□□ -0.02
SHH-203ENST00000435425 OR8H3Q8N146 312 aa14.95□□□□□ -0.02
SHH-203ENST00000435425 CFHR4Q92496 578 aa14.95□□□□□ -0.02
SHH-203ENST00000435425 SLC25A38Q96DW6 304 aa14.95□□□□□ -0.02
SHH-203ENST00000435425 SLC25A33Q9BSK2 321 aa14.95□□□□□ -0.02
SHH-203ENST00000435425 OR1A1Q9P1Q5 309 aa14.95□□□□□ -0.02
SHH-203ENST00000435425 SERPINE3A8MV23 424 aa14.94□□□□□ -0.02
SHH-203ENST00000435425 FAM106CPP0CH98 169 aa14.94□□□□□ -0.02
SHH-203ENST00000435425 CEACAM6P40199 344 aa14.94□□□□□ -0.02
SHH-203ENST00000435425 SCAND1P57086 179 aa14.94□□□□□ -0.02
SHH-203ENST00000435425 ARL6IP1Q15041 203 aa14.94□□□□□ -0.02
SHH-203ENST00000435425 ARSJQ5FYB0 599 aaPredicted RBP14.94□□□□□ -0.02
SHH-203ENST00000435425 STEAP3Q658P3 488 aa14.94□□□□□ -0.02
SHH-203ENST00000435425 GPR141Q7Z602 305 aa14.94□□□□□ -0.02
SHH-203ENST00000435425 TGIF2LXQ8IUE1 241 aa14.94□□□□□ -0.02
SHH-203ENST00000435425 OR2AK2Q8NG84 335 aa14.94□□□□□ -0.02
SHH-203ENST00000435425 RTN4IP1Q8WWV3 396 aaPredicted RBP14.94□□□□□ -0.02
SHH-203ENST00000435425 ST6GALNAC6Q969X2 333 aa14.94□□□□□ -0.02
SHH-203ENST00000435425 SPATA2Q9UM82 520 aa14.94□□□□□ -0.02
SHH-203ENST00000435425 TRAV18A0A075B6X5 111 aa14.93□□□□□ -0.02
SHH-203ENST00000435425 TMEM235A6NFC5 223 aa14.93□□□□□ -0.02
SHH-203ENST00000435425 ST8SIA5O15466 376 aa14.93□□□□□ -0.02
SHH-203ENST00000435425 SCGNO76038 276 aa14.93□□□□□ -0.02
SHH-203ENST00000435425 IGKV1D-33P01593 117 aa14.93□□□□□ -0.02
SHH-203ENST00000435425 IGKV1-33P01594 117 aa14.93□□□□□ -0.02
SHH-203ENST00000435425 TFAP2AP05549 437 aa14.93□□□□□ -0.02
SHH-203ENST00000435425 LPLP06858 475 aa14.93□□□□□ -0.02
SHH-203ENST00000435425 GSTT2P0CG29 244 aa14.93□□□□□ -0.02
SHH-203ENST00000435425 GSTT2BP0CG30 244 aa14.93□□□□□ -0.02
SHH-203ENST00000435425 ZBTB25P24278 435 aa14.93□□□□□ -0.02
SHH-203ENST00000435425 KIR2DS4P43632 304 aa14.93□□□□□ -0.02
SHH-203ENST00000435425 ALDH3B2P48448 385 aa14.93□□□□□ -0.02
SHH-203ENST00000435425 BLCAPP62952 87 aa14.93□□□□□ -0.02
SHH-203ENST00000435425 HABP2Q14520 560 aaPredicted RBP14.93□□□□□ -0.02
SHH-203ENST00000435425 ANKRD13BQ86YJ7 626 aa14.93□□□□□ -0.02
SHH-203ENST00000435425 DTX3Q8N9I9 347 aa14.93□□□□□ -0.02
SHH-203ENST00000435425 OR2T6Q8NHC8 308 aa14.93□□□□□ -0.02
SHH-203ENST00000435425 RBMXL1Q96E39 390 aaKnown RBP14.93□□□□□ -0.02
SHH-203ENST00000435425 RBM14Q96PK6 669 aaKnown RBP14.93□□□□□ -0.02
SHH-203ENST00000435425 PRSS22Q9GZN4 317 aa14.93□□□□□ -0.02
SHH-203ENST00000435425 PARP12Q9H0J9 701 aaKnown RBP14.93□□□□□ -0.02
SHH-203ENST00000435425 RANBP3Q9H6Z4 567 aaPredicted RBP14.93□□□□□ -0.02
SHH-203ENST00000435425 IGKV1-6A0A0C4DH72 117 aa14.92□□□□□ -0.02
SHH-203ENST00000435425 FAM90A9PA6NNJ1 464 aa14.92□□□□□ -0.02
SHH-203ENST00000435425 BET1O15155 118 aa14.92□□□□□ -0.02
SHH-203ENST00000435425 FABP7O15540 132 aa14.92□□□□□ -0.02
SHH-203ENST00000435425 TMEM11P17152 192 aa14.92□□□□□ -0.02
SHH-203ENST00000435425 OR3A3P47888 321 aa14.92□□□□□ -0.02
SHH-203ENST00000435425 GNG2P59768 71 aa14.92□□□□□ -0.02
SHH-203ENST00000435425 ZNF260Q3ZCT1 412 aa14.92□□□□□ -0.02
SHH-203ENST00000435425 HACD4Q5VWC8 232 aa14.92□□□□□ -0.02
SHH-203ENST00000435425 SHISA2Q6UWI4 295 aa14.92□□□□□ -0.02
SHH-203ENST00000435425 Q6ZS46 218 aa14.92□□□□□ -0.02
SHH-203ENST00000435425 THNSL2Q86YJ6 484 aa14.92□□□□□ -0.02
SHH-203ENST00000435425 NUDCD2Q8WVJ2 157 aa14.92□□□□□ -0.02
SHH-203ENST00000435425 WFDC12Q8WWY7 111 aa14.92□□□□□ -0.02
SHH-203ENST00000435425 SLC25A46Q96AG3 418 aa14.92□□□□□ -0.02
SHH-203ENST00000435425 AKR1E2Q96JD6 320 aa14.92□□□□□ -0.02
SHH-203ENST00000435425 ST6GALNAC5Q9BVH7 336 aa14.92□□□□□ -0.02
SHH-203ENST00000435425 ZNF702PQ9H963 129 aa14.92□□□□□ -0.02
SHH-203ENST00000435425 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.92□□□□□ -0.02
SHH-203ENST00000435425 DNHD1Q96M86 4753 aa14.92□□□□□ -0.02
SHH-203ENST00000435425 SH2D7A6NKC9 451 aaPredicted RBP14.91□□□□□ -0.02
SHH-203ENST00000435425 ZNF736B4DX44 427 aaPredicted RBP14.91□□□□□ -0.02
SHH-203ENST00000435425 TMEM127O75204 238 aa14.91□□□□□ -0.02
SHH-203ENST00000435425 OR2F2O95006 317 aa14.91□□□□□ -0.02
SHH-203ENST00000435425 GSTP1P09211 210 aaKnown RBP14.91□□□□□ -0.02
SHH-203ENST00000435425 PROK1P58294 105 aa14.91□□□□□ -0.02
SHH-203ENST00000435425 KRTAP10-3P60369 221 aa14.91□□□□□ -0.02
SHH-203ENST00000435425 KIR2DS1Q14954 304 aa14.91□□□□□ -0.02
SHH-203ENST00000435425 IGSF11Q5DX21 431 aa14.91□□□□□ -0.02
SHH-203ENST00000435425 LY6G6FQ5SQ64 297 aa14.91□□□□□ -0.02
SHH-203ENST00000435425 C16orf82Q7Z2V1 217 aa14.91□□□□□ -0.02
SHH-203ENST00000435425 ODF3L1Q8IXM7 274 aa14.91□□□□□ -0.02
SHH-203ENST00000435425 OR4A4PQ8NGN8 299 aa14.91□□□□□ -0.02
SHH-203ENST00000435425 ABHD14BQ96IU4 210 aa14.91□□□□□ -0.02
SHH-203ENST00000435425 DIABLOQ9NR28 239 aa14.91□□□□□ -0.02
SHH-203ENST00000435425 TENM1Q9UKZ4 2725 aa14.91□□□□□ -0.02
SHH-203ENST00000435425 GABARAPO95166 117 aa14.9□□□□□ -0.02
SHH-203ENST00000435425 VSIG10L2P0DP72 767 aa14.9□□□□□ -0.02
SHH-203ENST00000435425 ZNF137PP52743 207 aa14.9□□□□□ -0.02
SHH-203ENST00000435425 HERPUD1Q15011 391 aa14.9□□□□□ -0.02
SHH-203ENST00000435425 CTF1Q16619 201 aa14.9□□□□□ -0.02
SHH-203ENST00000435425 ABCA11PQ4W5N1 156 aa14.9□□□□□ -0.02
SHH-203ENST00000435425 C9orf152Q5JTZ5 239 aa14.9□□□□□ -0.02
SHH-203ENST00000435425 SAMD12Q8N8I0 201 aa14.9□□□□□ -0.02
SHH-203ENST00000435425 C11orf54Q9H0W9 315 aaPredicted RBP14.9□□□□□ -0.02
SHH-203ENST00000435425 IFI27L2Q9H2X8 130 aa14.9□□□□□ -0.02
SHH-203ENST00000435425 RNF150Q9ULK6 438 aa14.9□□□□□ -0.02
SHH-203ENST00000435425 IGKV1D-8A0A087WSZ0 117 aa14.89□□□□□ -0.03
SHH-203ENST00000435425 SAA2-SAA4A0A096LPE2 208 aa14.89□□□□□ -0.03
SHH-203ENST00000435425 TXNL1O43396 289 aa14.89□□□□□ -0.03
SHH-203ENST00000435425 LANCL1O43813 399 aa14.89□□□□□ -0.03
SHH-203ENST00000435425 SAA2P0DJI9 122 aaPredicted RBP14.89□□□□□ -0.03
SHH-203ENST00000435425 PNLIPRP3Q17RR3 467 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms