RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 IGHV3-43DP0DP04 118 aa22.04■■□□□ 1.12
LDB1-202ENST00000425280 RBPMSQ93062 196 aaKnown RBP22.04■■□□□ 1.12
LDB1-202ENST00000425280 IL22RA2Q969J5 263 aa22.04■■□□□ 1.12
LDB1-202ENST00000425280 RNF150Q9ULK6 438 aa22.04■■□□□ 1.12
LDB1-202ENST00000425280 DUXBA0A1W2PPF3 345 aa22.03■■□□□ 1.12
LDB1-202ENST00000425280 MSGN1A6NI15 193 aa22.03■■□□□ 1.12
LDB1-202ENST00000425280 DEFB108AA8MXU0 73 aa22.03■■□□□ 1.12
LDB1-202ENST00000425280 SCGB1D2O95969 90 aa22.03■■□□□ 1.12
LDB1-202ENST00000425280 LOXP28300 417 aaPredicted RBP22.03■■□□□ 1.12
LDB1-202ENST00000425280 ZNF645Q8N7E2 425 aa22.03■■□□□ 1.12
LDB1-202ENST00000425280 C14orf79Q96F83 325 aa22.03■■□□□ 1.12
LDB1-202ENST00000425280 LSM5Q9Y4Y9 91 aaKnown RBP22.03■■□□□ 1.12
LDB1-202ENST00000425280 DEDDO75618 318 aa22.03■■□□□ 1.12
LDB1-202ENST00000425280 FAM216BQ8N7L0 139 aa22.03■■□□□ 1.12
LDB1-202ENST00000425280 OR2D2Q9H210 308 aa22.03■■□□□ 1.12
LDB1-202ENST00000425280 ARID1AO14497 2285 aa22.03■■□□□ 1.12
LDB1-202ENST00000425280 PKDREJQ9NTG1 2253 aa22.03■■□□□ 1.12
LDB1-202ENST00000425280 TMEM178BH3BS89 294 aa22.02■■□□□ 1.12
LDB1-202ENST00000425280 LGALS8O00214 317 aa22.02■■□□□ 1.12
LDB1-202ENST00000425280 ESCO2Q56NI9 601 aa22.02■■□□□ 1.12
LDB1-202ENST00000425280 AQP10Q96PS8 301 aa22.02■■□□□ 1.12
LDB1-202ENST00000425280 FAM234AQ9H0X4 552 aa22.02■■□□□ 1.12
LDB1-202ENST00000425280 OR6C3Q9NZP0 311 aa22.02■■□□□ 1.12
LDB1-202ENST00000425280 SIGLEC5O15389 551 aa22.02■■□□□ 1.11
LDB1-202ENST00000425280 SPDEFO95238 335 aa22.02■■□□□ 1.11
LDB1-202ENST00000425280 SMCO1Q147U7 214 aa22.02■■□□□ 1.11
LDB1-202ENST00000425280 C1orf87Q8N0U7 546 aa22.02■■□□□ 1.11
LDB1-202ENST00000425280 OR4D5Q8NGN0 318 aa22.02■■□□□ 1.11
LDB1-202ENST00000425280 C5orf30Q96GV9 206 aa22.02■■□□□ 1.11
LDB1-202ENST00000425280 KALRNO60229 2985 aa22.02■■□□□ 1.11
LDB1-202ENST00000425280 K7EPK0 472 aa22.01■■□□□ 1.11
LDB1-202ENST00000425280 RLN2P04090 185 aa22.01■■□□□ 1.11
LDB1-202ENST00000425280 NUP62P37198 522 aaPredicted RBP22.01■■□□□ 1.11
LDB1-202ENST00000425280 LTC4SQ16873 150 aa22.01■■□□□ 1.11
LDB1-202ENST00000425280 SWI5Q1ZZU3 235 aa22.01■■□□□ 1.11
LDB1-202ENST00000425280 ZNF672Q499Z4 452 aaPredicted RBP22.01■■□□□ 1.11
LDB1-202ENST00000425280 NMSQ5H8A3 153 aa22.01■■□□□ 1.11
LDB1-202ENST00000425280 FAM71E2Q8N5Q1 922 aa22.01■■□□□ 1.11
LDB1-202ENST00000425280 CCL17Q92583 94 aa22.01■■□□□ 1.11
LDB1-202ENST00000425280 TMEM106BQ9NUM4 274 aa22.01■■□□□ 1.11
LDB1-202ENST00000425280 ARFGEF3Q5TH69 2177 aa22.01■■□□□ 1.11
LDB1-202ENST00000425280 ANKHD1Q8IWZ3 2542 aaKnown RBP22■■□□□ 1.11
LDB1-202ENST00000425280 TRAV38-1A0A0B4J264 116 aa22■■□□□ 1.11
LDB1-202ENST00000425280 SERPINE2P07093 398 aa22■■□□□ 1.11
LDB1-202ENST00000425280 CGB3P0DN86 165 aa22■■□□□ 1.11
LDB1-202ENST00000425280 CGB7P0DN87 165 aa22■■□□□ 1.11
LDB1-202ENST00000425280 VDAC1P21796 283 aa22■■□□□ 1.11
LDB1-202ENST00000425280 UBA52P62987 128 aaKnown RBP22■■□□□ 1.11
LDB1-202ENST00000425280 ALKAL2Q6UX46 152 aa22■■□□□ 1.11
LDB1-202ENST00000425280 ZBTB34Q8NCN2 500 aa22■■□□□ 1.11
LDB1-202ENST00000425280 ARPC5LQ9BPX5 153 aa22■■□□□ 1.11
LDB1-202ENST00000425280 TMEM204Q9BSN7 226 aa22■■□□□ 1.11
LDB1-202ENST00000425280 SMG1Q96Q15 3661 aaKnown RBP22■■□□□ 1.11
LDB1-202ENST00000425280 HCFC1P51610 2035 aa22■■□□□ 1.11
LDB1-202ENST00000425280 RPS10-NUDT3A0A1W2PQS6 291 aa22■■□□□ 1.11
LDB1-202ENST00000425280 ADAM20O43506 726 aa22■■□□□ 1.11
LDB1-202ENST00000425280 UQCRFS1P47985 274 aa22■■□□□ 1.11
LDB1-202ENST00000425280 ST8SIA2Q92186 375 aa22■■□□□ 1.11
LDB1-202ENST00000425280 LIN7CQ9NUP9 197 aaKnown RBP22■■□□□ 1.11
LDB1-202ENST00000425280 CALYQ9NYX4 217 aa22■■□□□ 1.11
LDB1-202ENST00000425280 F2RL2O00254 374 aa21.99■■□□□ 1.11
LDB1-202ENST00000425280 SPIN2AQ99865 258 aa21.99■■□□□ 1.11
LDB1-202ENST00000425280 SPIN2BQ9BPZ2 258 aa21.99■■□□□ 1.11
LDB1-202ENST00000425280 ZNF471Q9BX82 626 aaPredicted RBP21.99■■□□□ 1.11
LDB1-202ENST00000425280 PPIAL4EA0A075B759 164 aa21.99■■□□□ 1.11
LDB1-202ENST00000425280 NKX6-3A6NJ46 265 aa21.99■■□□□ 1.11
LDB1-202ENST00000425280 PPIAL4DF5H284 164 aa21.99■■□□□ 1.11
LDB1-202ENST00000425280 PPIAL4FP0DN26 164 aa21.99■■□□□ 1.11
LDB1-202ENST00000425280 ZNF16P17020 682 aaPredicted RBP21.99■■□□□ 1.11
LDB1-202ENST00000425280 EIF4EBP1Q13541 118 aaPredicted RBP21.99■■□□□ 1.11
LDB1-202ENST00000425280 MUC15Q8N387 334 aa21.99■■□□□ 1.11
LDB1-202ENST00000425280 GALNT11Q8NCW6 608 aa21.99■■□□□ 1.11
LDB1-202ENST00000425280 PCNPQ8WW12 178 aaKnown RBP21.99■■□□□ 1.11
LDB1-202ENST00000425280 JPT1Q9UK76 154 aa21.99■■□□□ 1.11
LDB1-202ENST00000425280 PPIAL4AQ9Y536 164 aa21.99■■□□□ 1.11
LDB1-202ENST00000425280 DSCAML1Q8TD84 2053 aa21.99■■□□□ 1.11
LDB1-202ENST00000425280 TANC2Q9HCD6 1990 aa21.98■■□□□ 1.11
LDB1-202ENST00000425280 CLEC18AA5D8T8 446 aa21.98■■□□□ 1.11
LDB1-202ENST00000425280 GNLYP22749 145 aa21.98■■□□□ 1.11
LDB1-202ENST00000425280 MSMO1Q15800 293 aa21.98■■□□□ 1.11
LDB1-202ENST00000425280 C17orf58Q2M2W7 97 aa21.98■■□□□ 1.11
LDB1-202ENST00000425280 C4orf17Q53FE4 359 aa21.98■■□□□ 1.11
LDB1-202ENST00000425280 CLLU1Q5K131 121 aa21.98■■□□□ 1.11
LDB1-202ENST00000425280 FGFRL1Q8N441 504 aa21.98■■□□□ 1.11
LDB1-202ENST00000425280 ZNF808Q8N4W9 903 aaPredicted RBP21.98■■□□□ 1.11
LDB1-202ENST00000425280 CLEC18CQ8NCF0 446 aa21.98■■□□□ 1.11
LDB1-202ENST00000425280 SCARB1Q8WTV0 552 aa21.98■■□□□ 1.11
LDB1-202ENST00000425280 GSX2Q9BZM3 304 aa21.98■■□□□ 1.11
LDB1-202ENST00000425280 PLEKHF2Q9H8W4 249 aa21.98■■□□□ 1.11
LDB1-202ENST00000425280 GNG12Q9UBI6 72 aa21.98■■□□□ 1.11
LDB1-202ENST00000425280 RNF212BA8MTL3 300 aa21.97■■□□□ 1.11
LDB1-202ENST00000425280 F5H0A9 414 aaPredicted RBP21.97■■□□□ 1.11
LDB1-202ENST00000425280 TMPRSS2O15393 492 aa21.97■■□□□ 1.11
LDB1-202ENST00000425280 IGKV1-39P01597 117 aa21.97■■□□□ 1.11
LDB1-202ENST00000425280 IGKV1D-39P04432 117 aa21.97■■□□□ 1.11
LDB1-202ENST00000425280 HKR1P10072 659 aa21.97■■□□□ 1.11
LDB1-202ENST00000425280 LOXL3P58215 753 aa21.97■■□□□ 1.11
LDB1-202ENST00000425280 MORN2Q502X0 79 aa21.97■■□□□ 1.11
LDB1-202ENST00000425280 ZNF585BQ52M93 769 aa21.97■■□□□ 1.11
LDB1-202ENST00000425280 AGMATQ9BSE5 352 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms