RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 MDH2P40926 338 aaKnown RBP8.49□□□□□ -1.05
VPS53-202ENST00000389040 SP6Q3SY56 376 aa8.49□□□□□ -1.05
VPS53-202ENST00000389040 GGNBP1Q5YKI7 109 aa8.49□□□□□ -1.05
VPS53-202ENST00000389040 WDR82Q6UXN9 313 aa8.49□□□□□ -1.05
VPS53-202ENST00000389040 C11orf53Q8IXP5 236 aa8.49□□□□□ -1.05
VPS53-202ENST00000389040 LRTM2Q8N967 370 aa8.49□□□□□ -1.05
VPS53-202ENST00000389040 OR1S1Q8NH92 325 aa8.49□□□□□ -1.05
VPS53-202ENST00000389040 AQP10Q96PS8 301 aa8.49□□□□□ -1.05
VPS53-202ENST00000389040 BPESC1Q9GZL8 116 aa8.49□□□□□ -1.05
VPS53-202ENST00000389040 CSMD1Q96PZ7 3565 aa8.49□□□□□ -1.05
VPS53-202ENST00000389040 OTOGQ6ZRI0 2925 aa8.49□□□□□ -1.05
VPS53-202ENST00000389040 PPIAL4EA0A075B759 164 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 MFSD2BA6NFX1 497 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 PPIAL4DF5H284 164 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 CDIPTO14735 213 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 DEGS1O15121 323 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 PGA5P0DJD9 388 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 PPIAL4FP0DN26 164 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 ERVK11-1P61568 191 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 HERPUD1Q15011 391 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 TEX36Q5VZQ5 186 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 Q6P435 159 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 LIAT1Q6ZQX7 453 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 FAM219AQ8IW50 185 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 FAM185AQ8N0U4 392 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 STOML3Q8TAV4 291 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 RBPMSQ93062 196 aaKnown RBP8.48□□□□□ -1.05
VPS53-202ENST00000389040 C18orf12Q96KH6 178 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 NRIP2Q9BQI9 281 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 DNTTIP1Q9H147 329 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 SEBOXQ9HB31 216 aaPredicted RBP8.48□□□□□ -1.05
VPS53-202ENST00000389040 SDHAF2Q9NX18 166 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 DNAJB11Q9UBS4 358 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 PFDN2Q9UHV9 154 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 WIPI2Q9Y4P8 454 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 PPIAL4AQ9Y536 164 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 TEX15Q9BXT5 2789 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 MSGN1A6NI15 193 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 SRRM5B3KS81 715 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 LYNX1G3V0Z9 82 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 LGALS8O00214 317 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 PHF1O43189 567 aaPredicted RBP8.48□□□□□ -1.05
VPS53-202ENST00000389040 TUSC2O75896 110 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 IGHV2-70P01814 119 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 LYNX1P0DP58 116 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 ZNF44P15621 663 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 GNRHRP30968 328 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 FAM74A1Q5RGS3 127 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 PRAMEF6Q5VXH4 476 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 ZNF880Q6PDB4 577 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 C5orf24Q7Z6I8 188 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 CCDC28AQ8IWP9 274 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 LGI3Q8N145 548 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 ZNF565Q8N9K5 539 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 RAB39BQ96DA2 213 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 MSI2Q96DH6 328 aaKnown RBP8.48□□□□□ -1.05
VPS53-202ENST00000389040 C1orf159Q96HA4 380 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 UFSP2Q9NUQ7 469 aa8.48□□□□□ -1.05
VPS53-202ENST00000389040 ARID1AO14497 2285 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 CCDC168Q8NDH2 2452 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 A0A096LNT2 108 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 IGKV1-6A0A0C4DH72 117 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 A0A1B0GW55 424 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 OOEPA6NGQ2 149 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 H7C1Q1 480 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 MPPED1O15442 326 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 DUX4L2P0CJ85 424 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 DUX4L3P0CJ86 424 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 DUX4L4P0CJ87 422 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 DUX4L5P0CJ88 424 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 DUX4L6P0CJ89 424 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 DUX4L7P0CJ90 424 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 TPT1P13693 172 aaKnown RBP8.47□□□□□ -1.05
VPS53-202ENST00000389040 CD99P14209 185 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 KCNJ3P48549 501 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 HLA-DRB3P79483 266 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 SMCO1Q147U7 214 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 PAN3Q58A45 887 aaKnown RBP8.47□□□□□ -1.05
VPS53-202ENST00000389040 SPRNQ5BIV9 151 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 LYZL2Q7Z4W2 148 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 LDLRAD3Q86YD5 345 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 FOXRED2Q8IWF2 684 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 GCSAMQ8N6F7 178 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 OR4A4PQ8NGN8 299 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 GLYATL2Q8WU03 294 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 SECTM1Q8WVN6 248 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 SHARPINQ9H0F6 387 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 DUX4Q9UBX2 424 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 MIOXQ9UGB7 285 aa8.47□□□□□ -1.05
VPS53-202ENST00000389040 C3orf85A0A1B0GTC6 90 aa8.46□□□□□ -1.05
VPS53-202ENST00000389040 SIRPB1O00241 398 aa8.46□□□□□ -1.05
VPS53-202ENST00000389040 GPR31O00270 319 aa8.46□□□□□ -1.05
VPS53-202ENST00000389040 SLC33A1O00400 549 aaPredicted RBP8.46□□□□□ -1.05
VPS53-202ENST00000389040 DEDDO75618 318 aa8.46□□□□□ -1.05
VPS53-202ENST00000389040 NXPH2O95156 264 aa8.46□□□□□ -1.05
VPS53-202ENST00000389040 OR2H2O95918 312 aa8.46□□□□□ -1.05
VPS53-202ENST00000389040 RND3P61587 244 aa8.46□□□□□ -1.05
VPS53-202ENST00000389040 SRPXP78539 464 aa8.46□□□□□ -1.05
VPS53-202ENST00000389040 ZNF146Q15072 292 aa8.46□□□□□ -1.05
VPS53-202ENST00000389040 SPIN3Q5JUX0 258 aa8.46□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms