RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 CEACAM3P40198 252 aa13.02□□□□□ -0.32
NPHP4-201ENST00000378156 OR1L4Q8NGR5 311 aa13.02□□□□□ -0.32
NPHP4-201ENST00000378156 POM121Q96HA1 1249 aa13.02□□□□□ -0.32
NPHP4-201ENST00000378156 MEGF10Q96KG7 1140 aa13.02□□□□□ -0.32
NPHP4-201ENST00000378156 G6PC2Q9NQR9 355 aa13.02□□□□□ -0.32
NPHP4-201ENST00000378156 CCL28Q9NRJ3 127 aa13.02□□□□□ -0.32
NPHP4-201ENST00000378156 CCL21O00585 134 aa13.02□□□□□ -0.32
NPHP4-201ENST00000378156 PGA5P0DJD9 388 aa13.02□□□□□ -0.32
NPHP4-201ENST00000378156 S100A4P26447 101 aaKnown RBP13.02□□□□□ -0.32
NPHP4-201ENST00000378156 HIST3H3Q16695 136 aa13.02□□□□□ -0.32
NPHP4-201ENST00000378156 PPP1R32Q7Z5V6 425 aa13.02□□□□□ -0.32
NPHP4-201ENST00000378156 MARVELD3Q96A59 401 aa13.02□□□□□ -0.32
NPHP4-201ENST00000378156 FAM206AQ9NX38 181 aa13.02□□□□□ -0.32
NPHP4-201ENST00000378156 TRAV39A0A0B4J263 110 aa13.02□□□□□ -0.33
NPHP4-201ENST00000378156 ZNF883P0CG24 379 aa13.02□□□□□ -0.33
NPHP4-201ENST00000378156 RCC1P18754 421 aaPredicted RBP13.02□□□□□ -0.33
NPHP4-201ENST00000378156 PPOXP50336 477 aa13.02□□□□□ -0.33
NPHP4-201ENST00000378156 C1orf185Q5T7R7 199 aa13.02□□□□□ -0.33
NPHP4-201ENST00000378156 DPPA3Q6W0C5 159 aa13.02□□□□□ -0.33
NPHP4-201ENST00000378156 A6NDN8 102 aa13.02□□□□□ -0.33
NPHP4-201ENST00000378156 FGF8P55075 233 aaPredicted RBP13.02□□□□□ -0.33
NPHP4-201ENST00000378156 VAX1Q5SQQ9 334 aa13.02□□□□□ -0.33
NPHP4-201ENST00000378156 OR5AC2Q9NZP5 309 aa13.02□□□□□ -0.33
NPHP4-201ENST00000378156 VWA8A3KMH1 1905 aa13.02□□□□□ -0.33
NPHP4-201ENST00000378156 ZNHIT1O43257 154 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 CD99P14209 185 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 GAS1P54826 345 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 ZP1P60852 638 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 KHDC3LQ587J8 217 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 COL5A1-AS1Q5SY13 56 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 LAMTOR1Q6IAA8 161 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 MS4A3Q96HJ5 214 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 C11orf94C9JXX5 98 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 CDX4O14627 284 aaPredicted RBP13.01□□□□□ -0.33
NPHP4-201ENST00000378156 F12P00748 615 aaPredicted RBP13.01□□□□□ -0.33
NPHP4-201ENST00000378156 OPRK1P41145 380 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 C1orf174Q8IYL3 243 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 RPL36A-HNRNPH2H7BZ11 118 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 NEURL1O76050 574 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 ZNF441Q8N8Z8 693 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 AQP3Q92482 292 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 NRIP2Q9BQI9 281 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 ZNF665Q9H7R5 613 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 A0A087WV48 116 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 IGKV3D-11A0A0A0MRZ8 115 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 PDE6DO43924 150 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 ACP1P24666 158 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 UCP2P55851 309 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 RBM11P57052 281 aaKnown RBP13.01□□□□□ -0.33
NPHP4-201ENST00000378156 FDX2Q6P4F2 183 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 GPR132Q9UNW8 380 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 OR2W1Q9Y3N9 320 aa13.01□□□□□ -0.33
NPHP4-201ENST00000378156 AMMECR1Q9Y4X0 333 aaPredicted RBP13.01□□□□□ -0.33
NPHP4-201ENST00000378156 NKX2-6A6NCS4 301 aa13□□□□□ -0.33
NPHP4-201ENST00000378156 LINC00114Q6XXX2 140 aa13□□□□□ -0.33
NPHP4-201ENST00000378156 SSX8Q7RTT4 187 aa13□□□□□ -0.33
NPHP4-201ENST00000378156 AKIRIN1Q9H9L7 192 aaPredicted RBP13□□□□□ -0.33
NPHP4-201ENST00000378156 OR1A1Q9P1Q5 309 aa13□□□□□ -0.33
NPHP4-201ENST00000378156 LOC101059948A0A1B0GTJ6 334 aa13□□□□□ -0.33
NPHP4-201ENST00000378156 CHST1O43916 411 aa13□□□□□ -0.33
NPHP4-201ENST00000378156 SFTPCP11686 197 aa13□□□□□ -0.33
NPHP4-201ENST00000378156 GABRA6Q16445 453 aa13□□□□□ -0.33
NPHP4-201ENST00000378156 CEACAM21Q3KPI0 293 aa13□□□□□ -0.33
NPHP4-201ENST00000378156 VSTM2AQ8TAG5 236 aa13□□□□□ -0.33
NPHP4-201ENST00000378156 TECRQ9NZ01 308 aaKnown RBP13□□□□□ -0.33
NPHP4-201ENST00000378156 FUT9Q9Y231 359 aa13□□□□□ -0.33
NPHP4-201ENST00000378156 EFNB1P98172 346 aa13□□□□□ -0.33
NPHP4-201ENST00000378156 ATP1A1-AS1Q5TC04 95 aa13□□□□□ -0.33
NPHP4-201ENST00000378156 LINC00596Q86U02 117 aa13□□□□□ -0.33
NPHP4-201ENST00000378156 FLVCR1-AS1Q8TAF5 88 aa13□□□□□ -0.33
NPHP4-201ENST00000378156 ZNF488Q96MN9 340 aa13□□□□□ -0.33
NPHP4-201ENST00000378156 ARHGEF17Q96PE2 2063 aaPredicted RBP13□□□□□ -0.33
NPHP4-201ENST00000378156 SPINK9Q5DT21 86 aa13□□□□□ -0.33
NPHP4-201ENST00000378156 OR4A4PQ8NGN8 299 aa13□□□□□ -0.33
NPHP4-201ENST00000378156 A0A1W2PN81 502 aa12.99□□□□□ -0.33
NPHP4-201ENST00000378156 CAMPP49913 170 aa12.99□□□□□ -0.33
NPHP4-201ENST00000378156 FAM3BP58499 235 aaPredicted RBP12.99□□□□□ -0.33
NPHP4-201ENST00000378156 ZNF343Q6P1L6 599 aa12.99□□□□□ -0.33
NPHP4-201ENST00000378156 SLC35E3Q7Z769 313 aa12.99□□□□□ -0.33
NPHP4-201ENST00000378156 WNT2BQ93097 391 aa12.99□□□□□ -0.33
NPHP4-201ENST00000378156 R3HDM4Q96D70 268 aa12.99□□□□□ -0.33
NPHP4-201ENST00000378156 SOSTQ9BQB4 213 aa12.99□□□□□ -0.33
NPHP4-201ENST00000378156 MAP1LC3CQ9BXW4 147 aa12.99□□□□□ -0.33
NPHP4-201ENST00000378156 RNF122Q9H9V4 155 aa12.99□□□□□ -0.33
NPHP4-201ENST00000378156 LYPD3O95274 346 aa12.99□□□□□ -0.33
NPHP4-201ENST00000378156 SHISA5Q8N114 240 aa12.99□□□□□ -0.33
NPHP4-201ENST00000378156 MISP3Q96FF7 219 aa12.99□□□□□ -0.33
NPHP4-201ENST00000378156 OPN3Q9H1Y3 402 aaPredicted RBP12.99□□□□□ -0.33
NPHP4-201ENST00000378156 FOXJ2Q9P0K8 574 aa12.99□□□□□ -0.33
NPHP4-201ENST00000378156 OR2A4O95047 310 aa12.99□□□□□ -0.33
NPHP4-201ENST00000378156 RBP4P02753 201 aa12.99□□□□□ -0.33
NPHP4-201ENST00000378156 OR2A7Q96R45 310 aa12.99□□□□□ -0.33
NPHP4-201ENST00000378156 MTCL1Q9Y4B5 1905 aaKnown RBP12.99□□□□□ -0.33
NPHP4-201ENST00000378156 FCGR3AP08637 254 aa12.99□□□□□ -0.33
NPHP4-201ENST00000378156 EWSR1Q01844 656 aaKnown RBP eCLIP12.99□□□□□ -0.338e-8■■■■■ 31.8
NPHP4-201ENST00000378156 SEBOXQ9HB31 216 aaPredicted RBP12.99□□□□□ -0.33
NPHP4-201ENST00000378156 CACNA1GO43497 2377 aa12.99□□□□□ -0.33
NPHP4-201ENST00000378156 PAFAH1B2P68402 229 aa12.98□□□□□ -0.33
NPHP4-201ENST00000378156 AESQ08117 197 aa12.98□□□□□ -0.33
NPHP4-201ENST00000378156 ANKRD55Q3KP44 614 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms