RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 OR5C1Q8NGR4 320 aa0.93□□□□□ -2.26
VPS13A-206ENST00000376646 CD200R1Q8TD46 325 aa0.93□□□□□ -2.26
VPS13A-206ENST00000376646 TNFAIP8L1Q8WVP5 186 aa0.93□□□□□ -2.26
VPS13A-206ENST00000376646 DNAJB3Q8WWF6 145 aa0.93□□□□□ -2.26
VPS13A-206ENST00000376646 RBP7Q96R05 134 aa0.93□□□□□ -2.26
VPS13A-206ENST00000376646 LLPHQ9BRT6 129 aaKnown RBP0.93□□□□□ -2.26
VPS13A-206ENST00000376646 LINC00527Q9UJ94 153 aa0.93□□□□□ -2.26
VPS13A-206ENST00000376646 VPREB3Q9UKI3 123 aa0.93□□□□□ -2.26
VPS13A-206ENST00000376646 MTCH2Q9Y6C9 303 aa0.93□□□□□ -2.26
VPS13A-206ENST00000376646 EIF4G1Q04637 1599 aaKnown RBP0.93□□□□□ -2.26
VPS13A-206ENST00000376646 COL18A1P39060 1754 aa0.93□□□□□ -2.26
VPS13A-206ENST00000376646 PCNX2A6NKB5 2137 aa0.93□□□□□ -2.26
VPS13A-206ENST00000376646 BRD4O60885 1362 aaPredicted RBP0.93□□□□□ -2.26
VPS13A-206ENST00000376646 TP53I11O14683 189 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 ATP8B1O43520 1251 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 ZNF73O43830 326 aaPredicted RBP0.92□□□□□ -2.26
VPS13A-206ENST00000376646 YEATS4O95619 227 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 OR4A8P0C604 315 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 OR13C7P0DN81 318 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 PSG4Q00888 419 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 TBC1D28Q2M2D7 210 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 HLA-DRB5Q30154 266 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 MESTQ5EB52 335 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 NATD1Q8N6N6 113 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 OR10P1Q8NGE3 313 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 OR8K1Q8NGG5 319 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 OR52E4Q8NGH9 312 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 OR2V1Q8NHB1 315 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 STOML3Q8TAV4 291 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 PPCDCQ96CD2 204 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 ZNF426Q9BUY5 554 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 IMP3Q9NV31 184 aaKnown RBP0.92□□□□□ -2.26
VPS13A-206ENST00000376646 DNAJC12Q9UKB3 198 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 SBDSQ9Y3A5 250 aaKnown RBP eCLIP0.92□□□□□ -2.26
VPS13A-206ENST00000376646 HSPE1-MOB4S4R3N1 261 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 FCGBPQ9Y6R7 5405 aaPredicted RBP0.92□□□□□ -2.26
VPS13A-206ENST00000376646 CACNA1GO43497 2377 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 LTBP2Q14767 1821 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 LOC102725191A0A1B0GVB3 256 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 C17orf51A8MQB3 221 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 C17orf98A8MV24 154 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 J3QRE1 110 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 CCRL2O00421 344 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 DENRO43583 198 aaKnown RBP0.92□□□□□ -2.26
VPS13A-206ENST00000376646 CFL1P23528 166 aaKnown RBP0.92□□□□□ -2.26
VPS13A-206ENST00000376646 CLEC12BQ2HXU8 276 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 SDHAF4Q5VUM1 108 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 SCGB1D4Q6XE38 83 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 SDIM1Q6ZPB5 146 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 PLEKHG7Q6ZR37 379 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 Q6ZRU5 148 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 OTUD6BQ8N6M0 293 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 C20orf166-AS1Q96NR2 134 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 MROQ9BYG7 248 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 MED28Q9H204 178 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 MRPS16Q9Y3D3 137 aaKnown RBP0.92□□□□□ -2.26
VPS13A-206ENST00000376646 SNX10Q9Y5X0 201 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 ZNF638Q14966 1978 aaKnown RBP0.92□□□□□ -2.26
VPS13A-206ENST00000376646 NLRC5Q86WI3 1866 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 DOCK6Q96HP0 2047 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 RAD50Q92878 1312 aa0.92□□□□□ -2.26
VPS13A-206ENST00000376646 C1orf232A0A0U1RR37 186 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 VPS37CA5D8V6 355 aaPredicted RBP0.91□□□□□ -2.26
VPS13A-206ENST00000376646 LINC00862A6NCI5 91 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 H3BSA7 217 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 ITGB1BP1O14713 200 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 AZIN1O14977 448 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 COCHO43405 550 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 DEDDO75618 318 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 CRTAPO75718 401 aaPredicted RBP0.91□□□□□ -2.26
VPS13A-206ENST00000376646 HBZP02008 142 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 TPM3P06753 285 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 CD99P14209 185 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 CBR1P16152 277 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 GZMHP20718 246 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 SLC35A2P78381 396 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 FOXF1Q12946 379 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 HTR4Q13639 388 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 FAM229BQ4G0N7 80 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 MRPL51Q4U2R6 128 aaKnown RBP0.91□□□□□ -2.26
VPS13A-206ENST00000376646 ATP5L2Q7Z4Y8 100 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 CD302Q8IX05 232 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 DNAAF3Q8N9W5 541 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 ACY3Q96HD9 319 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 ABHD14BQ96IU4 210 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 CAPZA3Q96KX2 299 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 LRRC19Q9H756 370 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 TP53TG1Q9Y2A0 90 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 FIS1Q9Y3D6 152 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 RIMS2Q9UQ26 1411 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 ADAMTSL1Q8N6G6 1762 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 ZNF878C9JN71 531 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 ZW10O43264 779 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 HPGDSO60760 199 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 STK16O75716 305 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 CPMP14384 443 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 NQO1P15559 274 aaKnown RBP0.91□□□□□ -2.26
VPS13A-206ENST00000376646 UGT2B7P16662 529 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 CDK2P24941 298 aa0.91□□□□□ -2.26
VPS13A-206ENST00000376646 HSPA9P38646 679 aaKnown RBP0.91□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms