RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 HOXA5P20719 270 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 IL11P20809 199 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 FUT5Q11128 374 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 PMCHL1Q16048 86 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 TAL2Q16559 108 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 OTPQ5XKR4 325 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 LAX1Q8IWV1 398 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 BAP18Q8IXM2 172 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 TDHQ8IZJ6 230 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 PELI3Q8N2H9 469 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 OR13A1Q8NGR1 328 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 VSTM2LQ96N03 204 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 AICDAQ9GZX7 198 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 ERRFI1Q9UJM3 462 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-202ENST00000375405 J3QR06 171 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 SRSF10O75494 262 aaKnown RBP4.08□□□□□ -1.76
SCN1A-202ENST00000375405 OR2T7P0C7T2 308 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 GDNFP39905 211 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 APOBEC1P41238 236 aaKnown RBP4.08□□□□□ -1.76
SCN1A-202ENST00000375405 PPP1R1AQ13522 171 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 TMEM241Q24JQ0 296 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.08□□□□□ -1.762e-6■■□□□ 12
SCN1A-202ENST00000375405 WFDC12Q8WWY7 111 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 CYB5R1Q9UHQ9 305 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 TRAV8-4A0A0B4J246 113 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 TMEM229AB2RXF0 380 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 ZNF561-AS1K7EIQ3 104 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 SDHDO14521 159 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 SMAD6O43541 496 aaKnown RBP4.08□□□□□ -1.76
SCN1A-202ENST00000375405 TNFSF14O43557 240 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 GJB3O75712 270 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 HPXP02790 462 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 MPC1LP0DKB6 136 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 SSTR5P35346 364 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 IER3P46695 156 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 PRRC2AP48634 2157 aaKnown RBP4.08□□□□□ -1.76
SCN1A-202ENST00000375405 FOXA1P55317 472 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 SPATS1Q496A3 300 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 BCDIN3DQ7Z5W3 292 aaKnown RBP4.08□□□□□ -1.76
SCN1A-202ENST00000375405 MED30Q96HR3 178 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 TOLLIPQ9H0E2 274 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 PEMTQ9UBM1 199 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 FOXA2Q9Y261 457 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-202ENST00000375405 BAZ2AQ9UIF9 1905 aaKnown RBP4.08□□□□□ -1.76
SCN1A-202ENST00000375405 DISP2A7MBM2 1401 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 LINC01387J3KSC0 135 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 ITGB1BP1O14713 200 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 TRGV3P03979 118 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 HOXB3P14651 431 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-202ENST00000375405 ZNF121P58317 390 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-202ENST00000375405 CCL7P80098 99 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 LSM10Q969L4 123 aaKnown RBP4.08□□□□□ -1.76
SCN1A-202ENST00000375405 MRPL24Q96A35 216 aaKnown RBP4.08□□□□□ -1.76
SCN1A-202ENST00000375405 SLAMF6Q96DU3 332 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 PRADC1Q9BSG0 188 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 SLC25A37Q9NYZ2 338 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 PTPRMP28827 1452 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 FAM186AA6NE01 2351 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 TNFRSF6BO95407 300 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 MGMTP16455 207 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 SELENOPP49908 381 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 GNG3P63215 75 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 SEC11AP67812 179 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 MRPS11P82912 194 aaKnown RBP4.08□□□□□ -1.76
SCN1A-202ENST00000375405 C20orf196Q8IYI0 205 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 VGLL2Q8N8G2 317 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 LRTM2Q8N967 370 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 SLC16A11Q8NCK7 471 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 PELI2Q9HAT8 420 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 SEMA5BQ9P283 1151 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 PEF1Q9UBV8 284 aaKnown RBP4.08□□□□□ -1.76
SCN1A-202ENST00000375405 CLEC2DQ9UHP7 191 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 TRBV20OR9-2A0A075B6H5 130 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 IGHA1P01876 353 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 IGHA2P01877 340 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 RPS25P62851 125 aaKnown RBP4.08□□□□□ -1.76
SCN1A-202ENST00000375405 BAK1Q16611 211 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 SP6Q3SY56 376 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 TIMM23BQ5SRD1 257 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 GFI1BQ5VTD9 330 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 HCP5Q6MZN7 132 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 PARM1Q6UWI2 310 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 NHLRC1Q6VVB1 395 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 FAM163AQ96GL9 167 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-202ENST00000375405 MARS2Q96GW9 593 aaKnown RBP4.08□□□□□ -1.76
SCN1A-202ENST00000375405 TMEM167BQ9NRX6 74 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 KLF12Q9Y4X4 402 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 SELENOKQ9Y6D0 94 aa4.08□□□□□ -1.76
SCN1A-202ENST00000375405 AHRRA9YTQ3 701 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 RRHO14718 337 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 DPM2O94777 84 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 C1SP09871 688 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 SRD5A1P18405 259 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 FZD5Q13467 585 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 CEACAM16Q2WEN9 425 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 RPL22L1Q6P5R6 122 aaKnown RBP4.07□□□□□ -1.76
SCN1A-202ENST00000375405 GOLT1AQ6ZVE7 132 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 RTL10Q7L3V2 364 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 RNF182Q8N6D2 247 aa4.07□□□□□ -1.76
SCN1A-202ENST00000375405 OR10G4Q8NGN3 311 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms