RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 TRAV38-1A0A0B4J264 116 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 PPIAL4DF5H284 164 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 H0Y980 276 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 TMPRSS2O15393 492 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 SPINT2O43291 252 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 CDS2O95674 445 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 PPIAL4FP0DN26 164 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 GZMHP20718 246 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 LOXL3P58215 753 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 LTC4SQ16873 150 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 C17orf58Q2M2W7 97 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 SELENOHQ8IZQ5 122 aaKnown RBP11.43□□□□□ -0.58
PTPRF-202ENST00000372405 C1orf87Q8N0U7 546 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 OR51H1Q8NH63 302 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 BBC3Q96PG8 261 aaPredicted RBP11.43□□□□□ -0.58
PTPRF-202ENST00000372405 VRK1Q99986 396 aaPredicted RBP11.43□□□□□ -0.58
PTPRF-202ENST00000372405 RNF150Q9ULK6 438 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 KCNS2Q9ULS6 477 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 UBE2J1Q9Y385 318 aaPredicted RBP11.43□□□□□ -0.58
PTPRF-202ENST00000372405 PPIAL4AQ9Y536 164 aa11.43□□□□□ -0.58
PTPRF-202ENST00000372405 IGHV1-69-2A0A0G2JMI3 117 aa11.42□□□□□ -0.58
PTPRF-202ENST00000372405 IFNA21P01568 189 aa11.42□□□□□ -0.58
PTPRF-202ENST00000372405 WNT2P09544 360 aa11.42□□□□□ -0.58
PTPRF-202ENST00000372405 OMGP23515 440 aa11.42□□□□□ -0.58
PTPRF-202ENST00000372405 S100A11P31949 105 aa11.42□□□□□ -0.58
PTPRF-202ENST00000372405 EIF4EBP1Q13541 118 aaPredicted RBP11.42□□□□□ -0.58
PTPRF-202ENST00000372405 TEX261Q6UWH6 196 aa11.42□□□□□ -0.58
PTPRF-202ENST00000372405 AKR1E2Q96JD6 320 aa11.42□□□□□ -0.58
PTPRF-202ENST00000372405 AGMATQ9BSE5 352 aa11.42□□□□□ -0.58
PTPRF-202ENST00000372405 CALYQ9NYX4 217 aa11.42□□□□□ -0.58
PTPRF-202ENST00000372405 OR5AC2Q9NZP5 309 aa11.42□□□□□ -0.58
PTPRF-202ENST00000372405 RBM7Q9Y580 266 aaKnown RBP11.42□□□□□ -0.58
PTPRF-202ENST00000372405 U3KQ87 197 aa11.42□□□□□ -0.58
PTPRF-202ENST00000372405 EPG5Q9HCE0 2579 aa11.42□□□□□ -0.58
PTPRF-202ENST00000372405 LYNX1G3V0Z9 82 aa11.41□□□□□ -0.58
PTPRF-202ENST00000372405 F2RL2O00254 374 aa11.41□□□□□ -0.58
PTPRF-202ENST00000372405 CFDP00746 253 aaPredicted RBP11.41□□□□□ -0.58
PTPRF-202ENST00000372405 LYNX1P0DP58 116 aa11.41□□□□□ -0.58
PTPRF-202ENST00000372405 LYL1P12980 280 aa11.41□□□□□ -0.58
PTPRF-202ENST00000372405 AP2S1P53680 142 aaPredicted RBP11.41□□□□□ -0.58
PTPRF-202ENST00000372405 C11orf71Q6IPW1 123 aa11.41□□□□□ -0.58
PTPRF-202ENST00000372405 LYPD2Q6UXB3 125 aa11.41□□□□□ -0.58
PTPRF-202ENST00000372405 THAP6Q8TBB0 222 aa11.41□□□□□ -0.58
PTPRF-202ENST00000372405 NINJ1Q92982 152 aa11.41□□□□□ -0.58
PTPRF-202ENST00000372405 RRNAD1Q96FB5 475 aaKnown RBP11.41□□□□□ -0.58
PTPRF-202ENST00000372405 ARL6Q9H0F7 186 aa11.41□□□□□ -0.58
PTPRF-202ENST00000372405 OR2D2Q9H210 308 aa11.41□□□□□ -0.58
PTPRF-202ENST00000372405 OR6C3Q9NZP0 311 aa11.41□□□□□ -0.58
PTPRF-202ENST00000372405 PRB1P04280 392 aa11.41□□□□□ -0.58
PTPRF-202ENST00000372405 SOD3P08294 240 aa11.41□□□□□ -0.58
PTPRF-202ENST00000372405 COL8A2P25067 703 aa11.41□□□□□ -0.58
PTPRF-202ENST00000372405 PPOXP50336 477 aa11.41□□□□□ -0.58
PTPRF-202ENST00000372405 SRPXP78539 464 aa11.41□□□□□ -0.58
PTPRF-202ENST00000372405 ZNF645Q8N7E2 425 aa11.41□□□□□ -0.58
PTPRF-202ENST00000372405 OR8H1Q8NGG4 311 aa11.41□□□□□ -0.58
PTPRF-202ENST00000372405 OR52M1Q8NGK5 317 aa11.41□□□□□ -0.58
PTPRF-202ENST00000372405 CTSZQ9UBR2 303 aa11.41□□□□□ -0.58
PTPRF-202ENST00000372405 RALYQ9UKM9 306 aaKnown RBP11.41□□□□□ -0.58
PTPRF-202ENST00000372405 TMED3Q9Y3Q3 217 aa11.41□□□□□ -0.58
PTPRF-202ENST00000372405 YLPM1P49750 1951 aaKnown RBP11.41□□□□□ -0.58
PTPRF-202ENST00000372405 NKX6-3A6NJ46 265 aa11.4□□□□□ -0.58
PTPRF-202ENST00000372405 ST8SIA5O15466 376 aa11.4□□□□□ -0.58
PTPRF-202ENST00000372405 IGKV1-39P01597 117 aa11.4□□□□□ -0.58
PTPRF-202ENST00000372405 IGKV1D-39P04432 117 aa11.4□□□□□ -0.58
PTPRF-202ENST00000372405 IGFBP2P18065 325 aa11.4□□□□□ -0.58
PTPRF-202ENST00000372405 ZNF345Q14585 488 aa11.4□□□□□ -0.58
PTPRF-202ENST00000372405 MORN2Q502X0 79 aa11.4□□□□□ -0.58
PTPRF-202ENST00000372405 PRSS54Q6PEW0 395 aa11.4□□□□□ -0.58
PTPRF-202ENST00000372405 ZNF695Q8IW36 515 aa11.4□□□□□ -0.58
PTPRF-202ENST00000372405 ZNF680Q8NEM1 530 aa11.4□□□□□ -0.58
PTPRF-202ENST00000372405 OR1S1Q8NH92 325 aa11.4□□□□□ -0.58
PTPRF-202ENST00000372405 ABHD14BQ96IU4 210 aa11.4□□□□□ -0.58
PTPRF-202ENST00000372405 SLC25A10Q9UBX3 287 aaPredicted RBP11.4□□□□□ -0.58
PTPRF-202ENST00000372405 JPT1Q9UK76 154 aa11.4□□□□□ -0.58
PTPRF-202ENST00000372405 USP9XQ93008 2570 aaPredicted RBP11.4□□□□□ -0.59
PTPRF-202ENST00000372405 KBTBD11-OT1A0A1B0GTJ5 212 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 MSGN1A6NI15 193 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 SNAPC5O75971 98 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 ZNF134P52741 427 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 S100A10P60903 97 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 RPL30P62888 115 aaKnown RBP11.39□□□□□ -0.59
PTPRF-202ENST00000372405 ZNF585BQ52M93 769 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 NMSQ5H8A3 153 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 ACOT7LQ6ZUV0 252 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 KCNRGQ8N5I3 272 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 DCUN1D4Q92564 292 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 RBPMSQ93062 196 aaKnown RBP11.39□□□□□ -0.59
PTPRF-202ENST00000372405 C19orf12Q9NSK7 152 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 CLN8Q9UBY8 286 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 PSG11Q9UQ72 335 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 YPEL1O60688 119 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 PROP1O75360 226 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 MMP23AO75900 390 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 IGHV3-7P01780 117 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 MBPP02686 304 aaPredicted RBP11.39□□□□□ -0.59
PTPRF-202ENST00000372405 DANCRP0C864 163 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 NDUFB7P17568 137 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 S100GP29377 79 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 HFEQ30201 348 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 FOXRED2Q8IWF2 684 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms