RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 CD300CQ08708 224 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 OR1L8Q8NGR8 309 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 ZNF426Q9BUY5 554 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 A0A1B0GU03 582 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 PINLYPA6NC86 204 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 SFTA3P0C7M3 94 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 SSMEM1Q8WWF3 244 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 ATPIF1Q9UII2 106 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 J3QR06 171 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 NDUFA2O43678 99 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 NEURL1O76050 574 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 CDS2O95674 445 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 IGHV1-2P23083 117 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 VAX1Q5SQQ9 334 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 CHRDL1Q9BU40 450 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 OR51B2Q9Y5P1 312 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 SH2D7A6NKC9 451 aaPredicted RBP12.79□□□□□ -0.36
COL17A1-201ENST00000353479 DBX1A6NMT0 343 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 AANATQ16613 207 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 B9A039 149 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 SMPD2O60906 423 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 RCC1P18754 421 aaPredicted RBP12.79□□□□□ -0.36
COL17A1-201ENST00000353479 S100A4P26447 101 aaKnown RBP12.79□□□□□ -0.36
COL17A1-201ENST00000353479 OR5P3Q8WZ94 311 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 ST6GAL2Q96JF0 529 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 ASCL3Q9NQ33 180 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 OPN4Q9UHM6 478 aa12.79□□□□□ -0.36
COL17A1-201ENST00000353479 IGHV3-21A0A0B4J1V1 117 aa12.78□□□□□ -0.36
COL17A1-201ENST00000353479 C20orf202A1L168 122 aa12.78□□□□□ -0.36
COL17A1-201ENST00000353479 GAPDHP04406 335 aaKnown RBP12.78□□□□□ -0.36
COL17A1-201ENST00000353479 CD40P25942 277 aa12.78□□□□□ -0.36
COL17A1-201ENST00000353479 CALYQ9NYX4 217 aa12.78□□□□□ -0.36
COL17A1-201ENST00000353479 ELF5Q9UKW6 265 aaPredicted RBP12.78□□□□□ -0.36
COL17A1-201ENST00000353479 A0A1W2PPQ1 181 aa12.78□□□□□ -0.36
COL17A1-201ENST00000353479 ZNF737O75373 536 aa12.78□□□□□ -0.36
COL17A1-201ENST00000353479 GLRXP35754 106 aa12.78□□□□□ -0.36
COL17A1-201ENST00000353479 ZNF429Q86V71 674 aa12.78□□□□□ -0.36
COL17A1-201ENST00000353479 SAXO1Q8IYX7 474 aa12.78□□□□□ -0.36
COL17A1-201ENST00000353479 CCL19Q99731 98 aa12.78□□□□□ -0.36
COL17A1-201ENST00000353479 C19orf67A6NJJ6 358 aa12.78□□□□□ -0.36
COL17A1-201ENST00000353479 HPRT1P00492 218 aa12.78□□□□□ -0.36
COL17A1-201ENST00000353479 CTDSP1Q9GZU7 261 aa12.78□□□□□ -0.36
COL17A1-201ENST00000353479 PLXNA3P51805 1871 aa12.78□□□□□ -0.36
COL17A1-201ENST00000353479 APOBEC3AP31941 199 aaPredicted RBP12.78□□□□□ -0.36
COL17A1-201ENST00000353479 PPP1R2P9O14990 202 aa12.77□□□□□ -0.36
COL17A1-201ENST00000353479 SPP1P10451 314 aa12.77□□□□□ -0.36
COL17A1-201ENST00000353479 CLLU1Q5K131 121 aa12.77□□□□□ -0.36
COL17A1-201ENST00000353479 COMMD1Q8N668 190 aa12.77□□□□□ -0.36
COL17A1-201ENST00000353479 FAM131CQ96AQ9 280 aa12.77□□□□□ -0.36
COL17A1-201ENST00000353479 Q96M66 194 aa12.77□□□□□ -0.36
COL17A1-201ENST00000353479 DHRS9Q9BPW9 319 aa12.77□□□□□ -0.36
COL17A1-201ENST00000353479 MMP26Q9NRE1 261 aa12.77□□□□□ -0.36
COL17A1-201ENST00000353479 RCC2Q9P258 522 aaKnown RBP12.77□□□□□ -0.36
COL17A1-201ENST00000353479 WSB1Q9Y6I7 421 aa12.77□□□□□ -0.36
COL17A1-201ENST00000353479 PPIAL4CA0A0B4J2A2 164 aa12.77□□□□□ -0.36
COL17A1-201ENST00000353479 LOC390937A0A1W2PQ73 354 aa12.77□□□□□ -0.36
COL17A1-201ENST00000353479 PPIAL4GP0DN37 164 aa12.77□□□□□ -0.36
COL17A1-201ENST00000353479 BSPH1Q075Z2 132 aa12.77□□□□□ -0.36
COL17A1-201ENST00000353479 LY6DQ14210 128 aa12.77□□□□□ -0.36
COL17A1-201ENST00000353479 TMEM255AQ5JRV8 349 aa12.77□□□□□ -0.36
COL17A1-201ENST00000353479 AQP3Q92482 292 aa12.77□□□□□ -0.36
COL17A1-201ENST00000353479 CLEC5AQ9NY25 188 aa12.77□□□□□ -0.36
COL17A1-201ENST00000353479 J3QW42 95 aa12.77□□□□□ -0.37
COL17A1-201ENST00000353479 NPY1RP25929 384 aa12.77□□□□□ -0.37
COL17A1-201ENST00000353479 EWSR1Q01844 656 aaKnown RBP eCLIP12.77□□□□□ -0.37
COL17A1-201ENST00000353479 ARF6P62330 175 aa12.77□□□□□ -0.37
COL17A1-201ENST00000353479 UBE2L3P68036 154 aaKnown RBP12.77□□□□□ -0.37
COL17A1-201ENST00000353479 SSX7Q7RTT5 188 aa12.77□□□□□ -0.37
COL17A1-201ENST00000353479 IDI2-AS1Q9NZ38 188 aa12.77□□□□□ -0.37
COL17A1-201ENST00000353479 GLIPR1P48060 266 aa12.77□□□□□ -0.37
COL17A1-201ENST00000353479 SULT1A1P50225 295 aa12.77□□□□□ -0.37
COL17A1-201ENST00000353479 LEAP2Q969E1 77 aa12.77□□□□□ -0.37
COL17A1-201ENST00000353479 SIRT7Q9NRC8 400 aa12.77□□□□□ -0.37
COL17A1-201ENST00000353479 MIOXQ9UGB7 285 aa12.76□□□□□ -0.37
COL17A1-201ENST00000353479 HLA-GP17693 338 aa12.76□□□□□ -0.37
COL17A1-201ENST00000353479 IFITM3Q01628 133 aa12.76□□□□□ -0.37
COL17A1-201ENST00000353479 TMEM88Q6PEY1 159 aa12.76□□□□□ -0.37
COL17A1-201ENST00000353479 ZNF645Q8N7E2 425 aa12.76□□□□□ -0.37
COL17A1-201ENST00000353479 TRBV23-1A0A0A0MS06 115 aa12.76□□□□□ -0.37
COL17A1-201ENST00000353479 WNT9BO14905 357 aa12.76□□□□□ -0.37
COL17A1-201ENST00000353479 C1orf162Q8NEQ5 155 aaPredicted RBP12.76□□□□□ -0.37
COL17A1-201ENST00000353479 VSIG10L2P0DP72 767 aa12.76□□□□□ -0.37
COL17A1-201ENST00000353479 HSF4Q9ULV5 492 aa12.76□□□□□ -0.37
COL17A1-201ENST00000353479 WDR81Q562E7 1941 aa12.76□□□□□ -0.37
COL17A1-201ENST00000353479 IGKV3-7A0A075B6H7 116 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 G3V3Q6 166 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 TRIM77I1YAP6 450 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 CELA3BP08861 270 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 FABP9Q0Z7S8 132 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 GAMTQ14353 236 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 ABLIM2Q6H8Q1 611 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 MYPOPQ86VE0 399 aaPredicted RBP12.75□□□□□ -0.37
COL17A1-201ENST00000353479 OR5R1Q8NH85 324 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 CLCF1Q9UBD9 225 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 NEUROG3Q9Y4Z2 214 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 IGHV2OR16-5A0A0B4J2B6 119 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 hCG_38984A0A1B0GV85 526 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 PDZD11Q5EBL8 140 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 MMP24Q9Y5R2 645 aa12.75□□□□□ -0.37
COL17A1-201ENST00000353479 IGLV3-32A0A0A0MS00 114 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms