RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 PTBP3O95758 552 aaKnown RBP12.97□□□□□ -0.33
UPF3B-202ENST00000345865 OR13C7P0DN81 318 aa12.97□□□□□ -0.33
UPF3B-202ENST00000345865 DAOP14920 347 aa12.97□□□□□ -0.33
UPF3B-202ENST00000345865 HOXC12P31275 282 aa12.97□□□□□ -0.33
UPF3B-202ENST00000345865 ACP7Q6ZNF0 438 aa12.97□□□□□ -0.33
UPF3B-202ENST00000345865 C1orf162Q8NEQ5 155 aaPredicted RBP12.97□□□□□ -0.33
UPF3B-202ENST00000345865 OR52L2PQ8NGH6 319 aa12.97□□□□□ -0.33
UPF3B-202ENST00000345865 STARD4Q96DR4 205 aa12.97□□□□□ -0.33
UPF3B-202ENST00000345865 RPS10P5Q9NQ39 176 aa12.97□□□□□ -0.33
UPF3B-202ENST00000345865 AKAP13Q12802 2813 aa12.97□□□□□ -0.33
UPF3B-202ENST00000345865 IGHV1-18A0A0C4DH31 117 aa12.96□□□□□ -0.33
UPF3B-202ENST00000345865 C7orf77A4D0Y5 90 aa12.96□□□□□ -0.33
UPF3B-202ENST00000345865 A6NLC8 198 aa12.96□□□□□ -0.33
UPF3B-202ENST00000345865 NDUFA2O43678 99 aa12.96□□□□□ -0.33
UPF3B-202ENST00000345865 SYNGR2O43760 224 aa12.96□□□□□ -0.33
UPF3B-202ENST00000345865 RAMP3O60896 148 aa12.96□□□□□ -0.33
UPF3B-202ENST00000345865 CGAP01215 116 aa12.96□□□□□ -0.33
UPF3B-202ENST00000345865 IGLV1-44P01699 117 aa12.96□□□□□ -0.33
UPF3B-202ENST00000345865 SNRNP70P08621 437 aaKnown RBP12.96□□□□□ -0.33
UPF3B-202ENST00000345865 CEACAM1P13688 526 aa12.96□□□□□ -0.33
UPF3B-202ENST00000345865 SULT1A1P50225 295 aa12.96□□□□□ -0.33
UPF3B-202ENST00000345865 HAPLN4Q86UW8 402 aa12.96□□□□□ -0.33
UPF3B-202ENST00000345865 TPRX1Q8N7U7 411 aa12.96□□□□□ -0.33
UPF3B-202ENST00000345865 RAB40CQ96S21 281 aa12.96□□□□□ -0.33
UPF3B-202ENST00000345865 SLC35B3Q9H1N7 401 aa12.96□□□□□ -0.33
UPF3B-202ENST00000345865 CXXC4Q9H2H0 198 aa12.96□□□□□ -0.33
UPF3B-202ENST00000345865 ZNF71Q9NQZ8 489 aaPredicted RBP12.96□□□□□ -0.33
UPF3B-202ENST00000345865 WSB1Q9Y6I7 421 aa12.96□□□□□ -0.33
UPF3B-202ENST00000345865 A0A1B0GW64 132 aa12.96□□□□□ -0.34
UPF3B-202ENST00000345865 TMEM30CPA0ZSE6 113 aa12.96□□□□□ -0.34
UPF3B-202ENST00000345865 TIMM8AO60220 97 aaPredicted RBP12.96□□□□□ -0.34
UPF3B-202ENST00000345865 KITLGP21583 273 aa12.96□□□□□ -0.34
UPF3B-202ENST00000345865 RPL23AP62750 156 aaKnown RBP12.96□□□□□ -0.34
UPF3B-202ENST00000345865 RPL30P62888 115 aaKnown RBP12.96□□□□□ -0.34
UPF3B-202ENST00000345865 LFNGQ8NES3 379 aa12.96□□□□□ -0.34
UPF3B-202ENST00000345865 GNPNAT1Q96EK6 184 aaPredicted RBP12.96□□□□□ -0.34
UPF3B-202ENST00000345865 PBDC1Q9BVG4 233 aa12.96□□□□□ -0.34
UPF3B-202ENST00000345865 SMCO4Q9NRQ5 59 aa12.96□□□□□ -0.34
UPF3B-202ENST00000345865 LIN7CQ9NUP9 197 aaKnown RBP12.96□□□□□ -0.34
UPF3B-202ENST00000345865 IGHV2OR16-5A0A0B4J2B6 119 aa12.95□□□□□ -0.34
UPF3B-202ENST00000345865 HBZP02008 142 aa12.95□□□□□ -0.34
UPF3B-202ENST00000345865 BRWD1-AS2P59051 145 aa12.95□□□□□ -0.34
UPF3B-202ENST00000345865 TAS2R30P59541 319 aa12.95□□□□□ -0.34
UPF3B-202ENST00000345865 MSMPQ1L6U9 139 aa12.95□□□□□ -0.34
UPF3B-202ENST00000345865 STX12Q86Y82 276 aa12.95□□□□□ -0.34
UPF3B-202ENST00000345865 FGFRL1Q8N441 504 aa12.95□□□□□ -0.34
UPF3B-202ENST00000345865 GALMQ96C23 342 aa12.95□□□□□ -0.34
UPF3B-202ENST00000345865 METTL15P1P0C7V9 234 aa12.95□□□□□ -0.34
UPF3B-202ENST00000345865 EIF4EBP1Q13541 118 aaPredicted RBP12.95□□□□□ -0.34
UPF3B-202ENST00000345865 SLC35E4Q6ICL7 350 aa12.95□□□□□ -0.34
UPF3B-202ENST00000345865 THNSL2Q86YJ6 484 aa12.95□□□□□ -0.34
UPF3B-202ENST00000345865 ZFP82Q8N141 532 aa12.95□□□□□ -0.34
UPF3B-202ENST00000345865 MRGPRDQ8TDS7 321 aa12.95□□□□□ -0.34
UPF3B-202ENST00000345865 ISOC2Q96AB3 205 aa12.95□□□□□ -0.34
UPF3B-202ENST00000345865 C14orf79Q96F83 325 aa12.95□□□□□ -0.34
UPF3B-202ENST00000345865 OR2D2Q9H210 308 aa12.95□□□□□ -0.34
UPF3B-202ENST00000345865 KCNJ16Q9NPI9 418 aa12.95□□□□□ -0.34
UPF3B-202ENST00000345865 ATMQ13315 3056 aa12.94□□□□□ -0.34
UPF3B-202ENST00000345865 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.94□□□□□ -0.34
UPF3B-202ENST00000345865 RBFOX3A6NFN3 312 aa12.94□□□□□ -0.34
UPF3B-202ENST00000345865 GLIPR1P48060 266 aa12.94□□□□□ -0.34
UPF3B-202ENST00000345865 RAB13P51153 203 aa12.94□□□□□ -0.34
UPF3B-202ENST00000345865 OR2B11Q5JQS5 317 aa12.94□□□□□ -0.34
UPF3B-202ENST00000345865 AVPI1Q5T686 147 aa12.94□□□□□ -0.34
UPF3B-202ENST00000345865 FIP1L1Q6UN15 594 aaKnown RBP12.94□□□□□ -0.34
UPF3B-202ENST00000345865 ZNF645Q8N7E2 425 aa12.94□□□□□ -0.34
UPF3B-202ENST00000345865 C2CD4CQ8TF44 421 aa12.94□□□□□ -0.34
UPF3B-202ENST00000345865 RSG1Q9BU20 258 aa12.94□□□□□ -0.34
UPF3B-202ENST00000345865 BCL2L14Q9BZR8 327 aa12.94□□□□□ -0.34
UPF3B-202ENST00000345865 PSENENQ9NZ42 101 aa12.94□□□□□ -0.34
UPF3B-202ENST00000345865 KCNIP1Q9NZI2 227 aa12.94□□□□□ -0.34
UPF3B-202ENST00000345865 DOCK11Q5JSL3 2073 aa12.94□□□□□ -0.34
UPF3B-202ENST00000345865 AHRRA9YTQ3 701 aa12.94□□□□□ -0.34
UPF3B-202ENST00000345865 M0R036 132 aa12.94□□□□□ -0.34
UPF3B-202ENST00000345865 CEACAM4O75871 244 aa12.94□□□□□ -0.34
UPF3B-202ENST00000345865 CD200P41217 278 aa12.94□□□□□ -0.34
UPF3B-202ENST00000345865 GABRA2P47869 451 aa12.94□□□□□ -0.34
UPF3B-202ENST00000345865 LINC00205P59089 165 aa12.94□□□□□ -0.34
UPF3B-202ENST00000345865 COL10A1Q03692 680 aa12.94□□□□□ -0.34
UPF3B-202ENST00000345865 ZNF808Q8N4W9 903 aaPredicted RBP12.94□□□□□ -0.34
UPF3B-202ENST00000345865 OOEPA6NGQ2 149 aa12.93□□□□□ -0.34
UPF3B-202ENST00000345865 IL2RGP31785 369 aa12.93□□□□□ -0.34
UPF3B-202ENST00000345865 SSTR5P35346 364 aa12.93□□□□□ -0.34
UPF3B-202ENST00000345865 HAGHQ16775 308 aa12.93□□□□□ -0.34
UPF3B-202ENST00000345865 ZNF718Q3SXZ3 478 aa12.93□□□□□ -0.34
UPF3B-202ENST00000345865 AKR1C8PQ5T2L2 129 aa12.93□□□□□ -0.34
UPF3B-202ENST00000345865 OR13A1Q8NGR1 328 aa12.93□□□□□ -0.34
UPF3B-202ENST00000345865 PRR7Q8TB68 274 aa12.93□□□□□ -0.34
UPF3B-202ENST00000345865 CD300LFQ8TDQ1 290 aa12.93□□□□□ -0.34
UPF3B-202ENST00000345865 SFT2D1Q8WV19 159 aa12.93□□□□□ -0.34
UPF3B-202ENST00000345865 HIST1H2BAQ96A08 127 aa12.93□□□□□ -0.34
UPF3B-202ENST00000345865 DCTN5Q9BTE1 182 aa12.93□□□□□ -0.34
UPF3B-202ENST00000345865 EGLN1Q9GZT9 426 aa12.93□□□□□ -0.34
UPF3B-202ENST00000345865 VSIRQ9H7M9 311 aa12.93□□□□□ -0.34
UPF3B-202ENST00000345865 PIGBOS1A0A0B4J2F0 54 aa12.93□□□□□ -0.34
UPF3B-202ENST00000345865 DFFBO76075 338 aa12.93□□□□□ -0.34
UPF3B-202ENST00000345865 FBP1P09467 338 aa12.93□□□□□ -0.34
UPF3B-202ENST00000345865 PAX6P26367 422 aa12.93□□□□□ -0.34
UPF3B-202ENST00000345865 MBNL2Q5VZF2 373 aaKnown RBP12.93□□□□□ -0.34
UPF3B-202ENST00000345865 LRP11Q86VZ4 500 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms