RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 PHIPQ8WWQ0 1821 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 ZFHX3Q15911 3703 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 TRAV38-1A0A0B4J264 116 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 RHBDL1O75783 438 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 CXCL10P02778 98 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 GCSHP23434 173 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 CRYBA2P53672 197 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 GABRG3Q99928 467 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 OCIAD1Q9NX40 245 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 KLF13Q9Y2Y9 288 aaPredicted RBP7.58□□□□□ -1.2
RTN3-202ENST00000339997 USF3Q68DE3 2245 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 IGHV3OR15-7A0A075B7D8 119 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 TRGV5A0A0B4J1U4 118 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 H3BVH4 76 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 SNAI2O43623 268 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 HRASP01112 189 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 PRB4P10163 310 aaPredicted RBP7.57□□□□□ -1.2
RTN3-202ENST00000339997 COL8A1P27658 744 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 MPLP40238 635 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 PMELP40967 661 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 GPR3P46089 330 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 NMUP48645 174 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 RND3P61587 244 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 PNRC1Q12796 327 aaPredicted RBP7.57□□□□□ -1.2
RTN3-202ENST00000339997 ZNF519Q8TB69 540 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 WDR61Q9GZS3 305 aaKnown RBP7.57□□□□□ -1.2
RTN3-202ENST00000339997 TNFRSF19Q9NS68 423 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 NPTNQ9Y639 398 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 MYO7BQ6PIF6 2116 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 MELTFP08582 738 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 TRGC1P0CF51 173 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 CD81P60033 236 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 SLC25A30Q5SVS4 291 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 FAHD2BQ6P2I3 314 aaPredicted RBP7.57□□□□□ -1.2
RTN3-202ENST00000339997 C9orf40Q8IXQ3 194 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 D2HGDHQ8N465 521 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 RNF133Q8WVZ7 376 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 FAHD2AQ96GK7 314 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 SIRT7Q9NRC8 400 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 AP5S1Q9NUS5 200 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 TRANK1O15050 2925 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 LOC105371267A0A1B0GV96 52 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 B4DEV8 164 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 UPK3AO75631 287 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 DLX1P56177 255 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 FOXO1Q12778 655 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 EIF3IQ13347 325 aaKnown RBP7.57□□□□□ -1.2
RTN3-202ENST00000339997 FADS6Q8N9I5 356 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 HIST1H2BAQ96A08 127 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 SLC25A28Q96A46 364 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 GGACTQ9BVM4 153 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 RALYQ9UKM9 306 aaKnown RBP7.57□□□□□ -1.2
RTN3-202ENST00000339997 SPG11Q96JI7 2443 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 ELOA3CA0A087WX78 387 aaPredicted RBP7.57□□□□□ -1.2
RTN3-202ENST00000339997 LOC101059948A0A1B0GTJ6 334 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 FOXS1O43638 330 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 SRSF10O75494 262 aaKnown RBP7.57□□□□□ -1.2
RTN3-202ENST00000339997 SEC11BP0C7V7 166 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 C21orf58P58505 322 aa7.57□□□□□ -1.2
RTN3-202ENST00000339997 IGHV3-72A0A0B4J1Y9 119 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 OR2T8A6NH00 312 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 TRDCB7Z8K6 153 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 ADRA2AP08913 450 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 TNXAQ16473 311 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 MRGPRGQ86SM5 289 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 NR2C2APQ86WQ0 139 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 OR8I2Q8N0Y5 310 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 C5orf17Q8NAS9 161 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 GRAMD2BQ96HH9 432 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 MRPL37Q9BZE1 423 aaKnown RBP7.56□□□□□ -1.2
RTN3-202ENST00000339997 LOC400499M0QZD8 3231 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 MYO18BQ8IUG5 2567 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 DNASE2O00115 360 aaPredicted RBP7.56□□□□□ -1.2
RTN3-202ENST00000339997 DNPH1O43598 174 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 OR10J1P30954 320 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 MRPS11P82912 194 aaKnown RBP7.56□□□□□ -1.2
RTN3-202ENST00000339997 KRTCAP3Q53RY4 240 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 OR4A47Q6IF82 309 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 OR6X1Q8NH79 312 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 C5orf66Q9H5L9 145 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 SH2D2AQ9NP31 389 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 ONECUT1Q9UBC0 465 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 OR4C46A6NHA9 309 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 BCL2P10415 239 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 LIMS1P48059 325 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 CCR5P51681 352 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 SRSF3P84103 164 aaKnown RBP7.56□□□□□ -1.2
RTN3-202ENST00000339997 RTP5Q14D33 572 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 ADIPOQQ15848 244 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 ZNF826PQ6ZT77 177 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 SARAFQ96BY9 339 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 PHF7Q9BWX1 381 aaPredicted RBP7.56□□□□□ -1.2
RTN3-202ENST00000339997 OR51M1Q9H341 326 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 MRPS18AQ9NVS2 196 aaKnown RBP7.56□□□□□ -1.2
RTN3-202ENST00000339997 PCOLCE2Q9UKZ9 415 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 DICER1Q9UPY3 1922 aaKnown RBP7.56□□□□□ -1.2
RTN3-202ENST00000339997 H7C2G1 150 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 BGLAPP02818 100 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 SUMO3P55854 103 aaPredicted RBP7.56□□□□□ -1.2
RTN3-202ENST00000339997 GAB4Q2WGN9 574 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms