RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 TCN2P20062 427 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 UCP1P25874 307 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 CD38P28907 300 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 PSMB3P49720 205 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 BLKP51451 505 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 FFAR4Q5NUL3 377 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 COL5A1-AS1Q5SY13 56 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 UNQ5815/PRO19632Q6UWF5 114 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 CENPVQ7Z7K6 275 aaPredicted RBP11.49□□□□□ -0.57
SKA3-201ENST00000298260 ZNF441Q8N8Z8 693 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 SGMS2Q8NHU3 365 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 C22orf15Q8WYQ4 148 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 TMEM9BQ9NQ34 198 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 PXMP4Q9Y6I8 212 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 A0A0U1RQV5 110 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 BLACEA4D250 179 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 RBFOX2O43251 390 aaKnown RBP eCLIP11.49□□□□□ -0.57
SKA3-201ENST00000298260 PGLYRP1O75594 196 aaPredicted RBP11.49□□□□□ -0.57
SKA3-201ENST00000298260 IFNA1P01562 189 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 WNT2P09544 360 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 MSR1P21757 451 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 GUCA1AP43080 201 aaPredicted RBP11.49□□□□□ -0.57
SKA3-201ENST00000298260 CAPZBP47756 277 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 COMPP49747 757 aaPredicted RBP11.49□□□□□ -0.57
SKA3-201ENST00000298260 SRPXP78539 464 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 TEX43Q6ZNM6 134 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 GJC3Q8NFK1 279 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 CADM4Q8NFZ8 388 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 SLC35E1Q96K37 410 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 ALKBH3Q96Q83 286 aaPredicted RBP11.49□□□□□ -0.57
SKA3-201ENST00000298260 C20orf144Q9BQM9 153 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 ZDHHC11Q9H8X9 412 aa11.49□□□□□ -0.57
SKA3-201ENST00000298260 TCRBV21S2A2A0A5A6 115 aa11.48□□□□□ -0.57
SKA3-201ENST00000298260 IGKV1-39P01597 117 aa11.48□□□□□ -0.57
SKA3-201ENST00000298260 IGKV1D-39P04432 117 aa11.48□□□□□ -0.57
SKA3-201ENST00000298260 LRRC75BQ2VPJ9 315 aa11.48□□□□□ -0.57
SKA3-201ENST00000298260 PRAMEF20Q5VT98 475 aa11.48□□□□□ -0.57
SKA3-201ENST00000298260 OR10G3Q8NGC4 313 aa11.48□□□□□ -0.57
SKA3-201ENST00000298260 IL1F10Q8WWZ1 152 aa11.48□□□□□ -0.57
SKA3-201ENST00000298260 HLA-CQ95604 372 aa11.48□□□□□ -0.57
SKA3-201ENST00000298260 WDYHV1Q96HA8 205 aa11.48□□□□□ -0.57
SKA3-201ENST00000298260 BTF3L4Q96K17 158 aa11.48□□□□□ -0.57
SKA3-201ENST00000298260 GABRG3Q99928 467 aa11.48□□□□□ -0.57
SKA3-201ENST00000298260 HIPK2Q9H2X6 1198 aa11.48□□□□□ -0.57
SKA3-201ENST00000298260 SPINK4O60575 86 aa11.48□□□□□ -0.57
SKA3-201ENST00000298260 NRASP01111 189 aa11.48□□□□□ -0.57
SKA3-201ENST00000298260 CRYABP02511 175 aaKnown RBP11.48□□□□□ -0.57
SKA3-201ENST00000298260 OR5G3P0C626 314 aa11.48□□□□□ -0.57
SKA3-201ENST00000298260 TMEM183BQ1AE95 376 aa11.48□□□□□ -0.57
SKA3-201ENST00000298260 PLPPR5Q32ZL2 321 aa11.48□□□□□ -0.57
SKA3-201ENST00000298260 MAJINQ3KP22 176 aa11.48□□□□□ -0.57
SKA3-201ENST00000298260 GCSAMLQ5JQS6 135 aa11.48□□□□□ -0.57
SKA3-201ENST00000298260 LYG1Q8N1E2 194 aa11.48□□□□□ -0.57
SKA3-201ENST00000298260 OR2M3Q8NG83 312 aa11.48□□□□□ -0.57
SKA3-201ENST00000298260 LRRC61Q9BV99 259 aa11.48□□□□□ -0.57
SKA3-201ENST00000298260 WDR61Q9GZS3 305 aaKnown RBP11.48□□□□□ -0.57
SKA3-201ENST00000298260 PRDM6Q9NQX0 595 aa11.48□□□□□ -0.57
SKA3-201ENST00000298260 TP73-AS1Q9UF72 201 aa11.48□□□□□ -0.57
SKA3-201ENST00000298260 NPIPB13A6NJU9 1138 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 NPIPB4C9JG80 1138 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 M0QZ24 198 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 SYNGR2O43760 224 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 SERPINE2P07093 398 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 ATP5G3P48201 142 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 C20orf204Q6ZNR8 217 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 TAF15Q92804 592 aaKnown RBP eCLIP11.47□□□□□ -0.57
SKA3-201ENST00000298260 SGCZQ96LD1 299 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 AGMATQ9BSE5 352 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 FBXL7Q9UJT9 491 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 USF3Q68DE3 2245 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 LRP4O75096 1905 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 LOC102724200A0A096LPH7 203 aaPredicted RBP11.47□□□□□ -0.57
SKA3-201ENST00000298260 NDUFB4O95168 129 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 TYMSP04818 313 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 HINT1P49773 126 aaPredicted RBP11.47□□□□□ -0.57
SKA3-201ENST00000298260 RBM11P57052 281 aaKnown RBP11.47□□□□□ -0.57
SKA3-201ENST00000298260 PPP1CBP62140 327 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 IGFBP7Q16270 282 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 SPINK9Q5DT21 86 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 RTL10Q7L3V2 364 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 WDR5BQ86VZ2 330 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 SAXO1Q8IYX7 474 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 SMRP1Q8NCR6 262 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 OR1L3Q8NH93 324 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 NABP1Q96AH0 204 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 SAMD10Q9BYL1 202 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 WNT10AQ9GZT5 417 aa11.47□□□□□ -0.57
SKA3-201ENST00000298260 RYDENQ9NUL5 291 aaKnown RBP11.47□□□□□ -0.57
SKA3-201ENST00000298260 DUXBA0A1W2PPF3 345 aa11.46□□□□□ -0.57
SKA3-201ENST00000298260 SLC17A3O00476 420 aa11.46□□□□□ -0.57
SKA3-201ENST00000298260 TGFBR3Q03167 851 aa11.46□□□□□ -0.57
SKA3-201ENST00000298260 PLCXD3Q63HM9 321 aa11.46□□□□□ -0.57
SKA3-201ENST00000298260 KCNIP4Q6PIL6 250 aa11.46□□□□□ -0.57
SKA3-201ENST00000298260 LINC01551Q86U37 167 aa11.46□□□□□ -0.57
SKA3-201ENST00000298260 ZNF611Q8N823 705 aa11.46□□□□□ -0.57
SKA3-201ENST00000298260 OIT3Q8WWZ8 545 aa11.46□□□□□ -0.57
SKA3-201ENST00000298260 PPP1R3CQ9UQK1 317 aa11.46□□□□□ -0.57
SKA3-201ENST00000298260 URB1O60287 2271 aaKnown RBP11.46□□□□□ -0.57
SKA3-201ENST00000298260 CLEC18AA5D8T8 446 aa11.46□□□□□ -0.58
SKA3-201ENST00000298260 G3V3Y1 287 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms