RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 KIAA0141Q14154 515 aaPredicted RBP12.88□□□□□ -0.35
DDX56-201ENST00000258772 NCMAPQ5T1S8 102 aa12.88□□□□□ -0.35
DDX56-201ENST00000258772 FIP1L1Q6UN15 594 aaKnown RBP12.88□□□□□ -0.35
DDX56-201ENST00000258772 MDS2Q8NDY4 140 aa12.88□□□□□ -0.35
DDX56-201ENST00000258772 MBD3L1Q8WWY6 194 aa12.88□□□□□ -0.35
DDX56-201ENST00000258772 BCL2L14Q9BZR8 327 aa12.88□□□□□ -0.35
DDX56-201ENST00000258772 MBNL3Q9NUK0 354 aaKnown RBP12.88□□□□□ -0.35
DDX56-201ENST00000258772 LIN7CQ9NUP9 197 aaKnown RBP12.88□□□□□ -0.35
DDX56-201ENST00000258772 IL17BQ9UHF5 180 aa12.88□□□□□ -0.35
DDX56-201ENST00000258772 RNF150Q9ULK6 438 aa12.88□□□□□ -0.35
DDX56-201ENST00000258772 KCNS2Q9ULS6 477 aa12.88□□□□□ -0.35
DDX56-201ENST00000258772 URGCP-MRPS24S4R325 110 aa12.88□□□□□ -0.35
DDX56-201ENST00000258772 TECTAO75443 2155 aa12.88□□□□□ -0.35
DDX56-201ENST00000258772 CACNA1DQ01668 2161 aa12.88□□□□□ -0.35
DDX56-201ENST00000258772 CEACAM6P40199 344 aa12.88□□□□□ -0.35
DDX56-201ENST00000258772 MPLP40238 635 aa12.88□□□□□ -0.35
DDX56-201ENST00000258772 ZNF726P1Q15940 193 aa12.88□□□□□ -0.35
DDX56-201ENST00000258772 TBC1D28Q2M2D7 210 aa12.88□□□□□ -0.35
DDX56-201ENST00000258772 LRRC75BQ2VPJ9 315 aa12.88□□□□□ -0.35
DDX56-201ENST00000258772 MYPOPQ86VE0 399 aaPredicted RBP12.88□□□□□ -0.35
DDX56-201ENST00000258772 DEFB127Q9H1M4 99 aa12.88□□□□□ -0.35
DDX56-201ENST00000258772 TMPRSS5Q9H3S3 457 aa12.88□□□□□ -0.35
DDX56-201ENST00000258772 CISD1Q9NZ45 108 aaKnown RBP12.88□□□□□ -0.35
DDX56-201ENST00000258772 POLDIP2Q9Y2S7 368 aa12.88□□□□□ -0.35
DDX56-201ENST00000258772 WIPI2Q9Y4P8 454 aa12.88□□□□□ -0.35
DDX56-201ENST00000258772 CHD3Q12873 2000 aaKnown RBP12.88□□□□□ -0.35
DDX56-201ENST00000258772 COL6A3P12111 3177 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 ZFP92A6NM28 416 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 LINC00587B1AMM8 73 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 CDIPTO14735 213 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 HOXA5P20719 270 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 RAB11AP62491 216 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 HBG1P69891 147 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 HBG2P69892 147 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 ZNF146Q15072 292 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 FAM90A2PQ658T7 463 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 ZNF787Q6DD87 383 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 LCN15Q6UWW0 184 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.87□□□□□ -0.35
DDX56-201ENST00000258772 DRAM1Q8N682 238 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 WDYHV1Q96HA8 205 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 OR2J1Q9GZK6 312 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 ZNF665Q9H7R5 613 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 CELA3BP08861 270 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 PGA5P0DJD9 388 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 BCL2P10415 239 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 SERF2P84101 59 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 ZNF674Q2M3X9 581 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 FGFRL1Q8N441 504 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 GUCD1Q96NT3 240 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 TMEM9BQ9NQ34 198 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 OR14J1Q9UGF5 321 aa12.87□□□□□ -0.35
DDX56-201ENST00000258772 B4DEV8 164 aa12.86□□□□□ -0.35
DDX56-201ENST00000258772 J3QW42 95 aa12.86□□□□□ -0.35
DDX56-201ENST00000258772 SH2D1BO14796 132 aa12.86□□□□□ -0.35
DDX56-201ENST00000258772 NXPH2O95156 264 aa12.86□□□□□ -0.35
DDX56-201ENST00000258772 PPP1CBP62140 327 aa12.86□□□□□ -0.35
DDX56-201ENST00000258772 SPANXN5Q5MJ07 72 aa12.86□□□□□ -0.35
DDX56-201ENST00000258772 SSX7Q7RTT5 188 aa12.86□□□□□ -0.35
DDX56-201ENST00000258772 RCC1LQ96I51 464 aaKnown RBP12.86□□□□□ -0.35
DDX56-201ENST00000258772 OR51M1Q9H341 326 aa12.86□□□□□ -0.35
DDX56-201ENST00000258772 USF3Q68DE3 2245 aa12.86□□□□□ -0.35
DDX56-201ENST00000258772 TGIF2-C20orf24A0A0A6YYL0 155 aa12.85□□□□□ -0.35
DDX56-201ENST00000258772 SMPD2O60906 423 aa12.85□□□□□ -0.35
DDX56-201ENST00000258772 YIF1AO95070 293 aa12.85□□□□□ -0.35
DDX56-201ENST00000258772 BTF3P20290 206 aaKnown RBP12.85□□□□□ -0.35
DDX56-201ENST00000258772 FGF8P55075 233 aaPredicted RBP12.85□□□□□ -0.35
DDX56-201ENST00000258772 ERVS71-1P61550 626 aa12.85□□□□□ -0.35
DDX56-201ENST00000258772 ALKBH6Q3KRA9 238 aa12.85□□□□□ -0.35
DDX56-201ENST00000258772 ACSF3Q4G176 576 aaPredicted RBP12.85□□□□□ -0.35
DDX56-201ENST00000258772 OR4C12Q96R67 309 aa12.85□□□□□ -0.35
DDX56-201ENST00000258772 COLQQ9Y215 455 aaPredicted RBP12.85□□□□□ -0.35
DDX56-201ENST00000258772 IGHV3-64DA0A0J9YX35 117 aa12.85□□□□□ -0.35
DDX56-201ENST00000258772 LNP1A1A4G5 178 aa12.85□□□□□ -0.35
DDX56-201ENST00000258772 MRPL49Q13405 166 aaKnown RBP12.85□□□□□ -0.35
DDX56-201ENST00000258772 ZNF610Q8N9Z0 462 aa12.85□□□□□ -0.35
DDX56-201ENST00000258772 CA5BP1Q8WTZ4 195 aa12.85□□□□□ -0.35
DDX56-201ENST00000258772 WDR61Q9GZS3 305 aaKnown RBP12.85□□□□□ -0.35
DDX56-201ENST00000258772 DOK5Q9P104 306 aa12.85□□□□□ -0.35
DDX56-201ENST00000258772 SPRR3Q9UBC9 169 aa12.85□□□□□ -0.35
DDX56-201ENST00000258772 MIOXQ9UGB7 285 aa12.85□□□□□ -0.35
DDX56-201ENST00000258772 GPR179Q6PRD1 2367 aa12.85□□□□□ -0.35
DDX56-201ENST00000258772 CD46P15529 392 aa12.84□□□□□ -0.35
DDX56-201ENST00000258772 RNFT1Q5M7Z0 435 aa12.84□□□□□ -0.35
DDX56-201ENST00000258772 PARD6GQ9BYG4 376 aaPredicted RBP12.84□□□□□ -0.35
DDX56-201ENST00000258772 DOCK11Q5JSL3 2073 aa12.84□□□□□ -0.35
DDX56-201ENST00000258772 TRGV5A0A0B4J1U4 118 aa12.84□□□□□ -0.35
DDX56-201ENST00000258772 RNF212BA8MTL3 300 aa12.84□□□□□ -0.35
DDX56-201ENST00000258772 FAM90A26D6RGX4 464 aa12.84□□□□□ -0.35
DDX56-201ENST00000258772 CYB5BO43169 146 aa12.84□□□□□ -0.35
DDX56-201ENST00000258772 CDX1P47902 265 aaPredicted RBP12.84□□□□□ -0.35
DDX56-201ENST00000258772 NDUFA6P56556 154 aa12.84□□□□□ -0.35
DDX56-201ENST00000258772 PNRC1Q12796 327 aaPredicted RBP12.84□□□□□ -0.35
DDX56-201ENST00000258772 TMEM41BQ5BJD5 291 aa12.84□□□□□ -0.35
DDX56-201ENST00000258772 FER1L6-AS2Q96M78 137 aa12.84□□□□□ -0.35
DDX56-201ENST00000258772 TOLLIPQ9H0E2 274 aa12.84□□□□□ -0.35
DDX56-201ENST00000258772 CDH20Q9HBT6 801 aa12.84□□□□□ -0.35
DDX56-201ENST00000258772 GRPP07492 148 aa12.83□□□□□ -0.36
DDX56-201ENST00000258772 RAC2P15153 192 aa12.83□□□□□ -0.36
DDX56-201ENST00000258772 S100PP25815 95 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms