RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 HRO43593 1189 aa2.46□□□□□ -2.01
SCN1A-219ENST00000641575 WNT3P56703 355 aa2.46□□□□□ -2.01
SCN1A-219ENST00000641575 CLDN20P56880 219 aa2.46□□□□□ -2.01
SCN1A-219ENST00000641575 FOXL1Q12952 345 aa2.46□□□□□ -2.01
SCN1A-219ENST00000641575 RPS26P11Q5JNZ5 115 aaPredicted RBP2.46□□□□□ -2.01
SCN1A-219ENST00000641575 ZDHHC24Q6UX98 284 aa2.46□□□□□ -2.01
SCN1A-219ENST00000641575 PRSS42Q7Z5A4 293 aa2.46□□□□□ -2.01
SCN1A-219ENST00000641575 RGP1Q92546 391 aaPredicted RBP2.46□□□□□ -2.01
SCN1A-219ENST00000641575 SLCO4A1Q96BD0 722 aa2.46□□□□□ -2.01
SCN1A-219ENST00000641575 TBX15Q96SF7 602 aa2.46□□□□□ -2.01
SCN1A-219ENST00000641575 C1QTNF2Q9BXJ5 285 aa2.46□□□□□ -2.01
SCN1A-219ENST00000641575 NAT8Q9UHE5 227 aa2.46□□□□□ -2.01
SCN1A-219ENST00000641575 BTNL2Q9UIR0 455 aa2.46□□□□□ -2.01
SCN1A-219ENST00000641575 A0A087WX48 190 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 B9A039 149 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 SMIM13P0DJ93 91 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 SLC25A4P12235 298 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 KLK2P20151 261 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 CD69Q07108 199 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 RIGQ13278 110 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 MRPL58Q14197 206 aaKnown RBP2.46□□□□□ -2.02
SCN1A-219ENST00000641575 FOXB2Q5VYV0 432 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 ETFBKMTQ8IXQ9 262 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 LMO3Q8TAP4 145 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 ST8SIA1Q92185 356 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 PAAF1Q9BRP4 392 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 OR52D1Q9H346 318 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 NHP2Q9NX24 153 aaKnown RBP2.46□□□□□ -2.02
SCN1A-219ENST00000641575 KDM3BQ7LBC6 1761 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 PAPPAQ13219 1627 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 SIPA1L2Q9P2F8 1722 aaPredicted RBP2.46□□□□□ -2.02
SCN1A-219ENST00000641575 PRSS37A4D1T9 235 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 CTNSO60931 367 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 ONECUT2O95948 504 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 TRGC2P03986 189 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 IAPPP10997 89 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 RPA2P15927 270 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 AWAT1Q58HT5 328 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 TCEAL8Q8IYN2 117 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 TFAP2BQ92481 460 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 CDX2Q99626 313 aaPredicted RBP2.46□□□□□ -2.02
SCN1A-219ENST00000641575 DERL1Q9BUN8 251 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 GPR27Q9NS67 375 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 CHST2Q9Y4C5 530 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 CAMTA1Q9Y6Y1 1673 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 TNFSF11O14788 317 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 SP1P08047 785 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 MTNR1BP49286 362 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 PRLHRP49683 370 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 STC1P52823 247 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 CTF1Q16619 201 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM249Q2WGJ8 235 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 C6orf136Q5SQH8 315 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 LIMS2Q7Z4I7 341 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 BRK1Q8WUW1 75 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 HSD17B10Q99714 261 aaKnown RBP2.46□□□□□ -2.02
SCN1A-219ENST00000641575 SIGMAR1Q99720 223 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 SCNM1Q9BWG6 230 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 TNFRSF19Q9NS68 423 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 H3BRM9 83 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 MMP9P14780 707 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 CD68P34810 354 aaPredicted RBP2.46□□□□□ -2.02
SCN1A-219ENST00000641575 DRD3P35462 400 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 GPR18Q14330 331 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 SLC25A34Q6PIV7 304 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 Q6ZWC4 215 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 TM4SF19Q96DZ7 209 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 KAZALD1Q96I82 304 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 LINC00052Q96N35 136 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 GPR82Q96P67 336 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 OR5M11Q96RB7 305 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 MGST2Q99735 147 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 ADAT1Q9BUB4 502 aaKnown RBP2.46□□□□□ -2.02
SCN1A-219ENST00000641575 GP6Q9HCN6 339 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 MMP17Q9ULZ9 603 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 MFNGO00587 321 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 PTGESO14684 152 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 CYBAP13498 195 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 PSMB5P28074 263 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 CSNK1EP49674 416 aaKnown RBP2.46□□□□□ -2.02
SCN1A-219ENST00000641575 SRSF1Q07955 248 aaKnown RBP eCLIP2.46□□□□□ -2.02
SCN1A-219ENST00000641575 P2RY6Q15077 328 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 KLF17Q5JT82 389 aaPredicted RBP2.46□□□□□ -2.02
SCN1A-219ENST00000641575 SLC16A11Q8NCK7 471 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 OR52N1Q8NH53 320 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 OR9G1Q8NH87 305 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 PP6455Q8WZ26 134 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 ALG14Q96F25 216 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 ST6GALNAC4Q9H4F1 302 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 PLSCR4Q9NRQ2 329 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 SLC45A2Q9UMX9 530 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 DMRT1Q9Y5R6 373 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF292O60281 2723 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 IGSF23A1L1A6 192 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 ADRA1AP35348 466 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM95Q3KNT9 176 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF506Q5JVG8 444 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF678Q5SXM1 525 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 NCMAPQ5T1S8 102 aa2.46□□□□□ -2.02
SCN1A-219ENST00000641575 LCN12Q6JVE5 192 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms