RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 A0A1W2PP11 408 aa12.71□□□□□ -0.37
CLN3-264ENST00000637985 A0A1W2PPK0 400 aa12.71□□□□□ -0.37
CLN3-264ENST00000637985 ORC5O43913 435 aa12.71□□□□□ -0.37
CLN3-264ENST00000637985 IGHV3-7P01780 117 aa12.71□□□□□ -0.37
CLN3-264ENST00000637985 IGHG2P01859 326 aa12.71□□□□□ -0.37
CLN3-264ENST00000637985 MAPK3P27361 379 aaPredicted RBP12.71□□□□□ -0.37
CLN3-264ENST00000637985 RNLSQ5VYX0 342 aa12.71□□□□□ -0.37
CLN3-264ENST00000637985 GLIPR1L1Q6UWM5 242 aa12.71□□□□□ -0.37
CLN3-264ENST00000637985 ZNF497Q6ZNH5 498 aa12.71□□□□□ -0.37
CLN3-264ENST00000637985 RNF152Q8N8N0 203 aa12.71□□□□□ -0.37
CLN3-264ENST00000637985 C8orf31Q8N9H6 132 aa12.71□□□□□ -0.37
CLN3-264ENST00000637985 OR10X1Q8NGY0 326 aa12.71□□□□□ -0.37
CLN3-264ENST00000637985 ARL11Q969Q4 196 aa12.71□□□□□ -0.37
CLN3-264ENST00000637985 MUL1Q969V5 352 aa12.71□□□□□ -0.37
CLN3-264ENST00000637985 RCC2Q9P258 522 aaKnown RBP12.71□□□□□ -0.37
CLN3-264ENST00000637985 A0A1W2PPI3 338 aa12.7□□□□□ -0.38
CLN3-264ENST00000637985 FAM90A10PA6NDY2 464 aa12.7□□□□□ -0.38
CLN3-264ENST00000637985 FAM90A7PA6NKC0 464 aa12.7□□□□□ -0.38
CLN3-264ENST00000637985 TRIM64CA6NLI5 447 aa12.7□□□□□ -0.38
CLN3-264ENST00000637985 FAM90A23PA8MXZ1 464 aa12.7□□□□□ -0.38
CLN3-264ENST00000637985 MCRIP1C9JLW8 97 aa12.7□□□□□ -0.38
CLN3-264ENST00000637985 C15orf65H3BRN8 121 aa12.7□□□□□ -0.38
CLN3-264ENST00000637985 MT-ND4P03905 459 aa12.7□□□□□ -0.38
CLN3-264ENST00000637985 MAS1P04201 325 aa12.7□□□□□ -0.38
CLN3-264ENST00000637985 GNG10P50151 68 aa12.7□□□□□ -0.38
CLN3-264ENST00000637985 PNLIPRP3Q17RR3 467 aa12.7□□□□□ -0.38
CLN3-264ENST00000637985 Q3ZCU0 254 aa12.7□□□□□ -0.38
CLN3-264ENST00000637985 AWAT2Q6E213 333 aa12.7□□□□□ -0.38
CLN3-264ENST00000637985 SLC35E3Q7Z769 313 aa12.7□□□□□ -0.38
CLN3-264ENST00000637985 ZNF429Q86V71 674 aa12.7□□□□□ -0.38
CLN3-264ENST00000637985 LYPD6Q86Y78 171 aa12.7□□□□□ -0.38
CLN3-264ENST00000637985 FOXRED2Q8IWF2 684 aa12.7□□□□□ -0.38
CLN3-264ENST00000637985 LINC00311Q8N616 119 aa12.7□□□□□ -0.38
CLN3-264ENST00000637985 NKAIN3Q8N8D7 197 aa12.7□□□□□ -0.38
CLN3-264ENST00000637985 OR56B4Q8NH76 319 aa12.7□□□□□ -0.38
CLN3-264ENST00000637985 NEK7Q8TDX7 302 aa12.7□□□□□ -0.38
CLN3-264ENST00000637985 UQCC2Q9BRT2 126 aa12.7□□□□□ -0.38
CLN3-264ENST00000637985 RAB9BQ9NP90 201 aa12.7□□□□□ -0.38
CLN3-264ENST00000637985 LINC01548A6NM66 108 aa12.69□□□□□ -0.38
CLN3-264ENST00000637985 AIPO00170 330 aa12.69□□□□□ -0.38
CLN3-264ENST00000637985 FGF16O43320 207 aa12.69□□□□□ -0.38
CLN3-264ENST00000637985 GLAP06280 429 aa12.69□□□□□ -0.38
CLN3-264ENST00000637985 GP9P14770 177 aa12.69□□□□□ -0.38
CLN3-264ENST00000637985 SPNP16150 400 aa12.69□□□□□ -0.38
CLN3-264ENST00000637985 ZNF816Q0VGE8 651 aaPredicted RBP12.69□□□□□ -0.38
CLN3-264ENST00000637985 DIAPH2-AS1Q14236 149 aa12.69□□□□□ -0.38
CLN3-264ENST00000637985 TMEM30BQ3MIR4 351 aa12.69□□□□□ -0.38
CLN3-264ENST00000637985 CXorf66Q5JRM2 361 aaPredicted RBP12.69□□□□□ -0.38
CLN3-264ENST00000637985 MS4A15Q8N5U1 240 aa12.69□□□□□ -0.38
CLN3-264ENST00000637985 CCDC107Q8WV48 283 aa12.69□□□□□ -0.38
CLN3-264ENST00000637985 C4orf3Q8WVX3 66 aa12.69□□□□□ -0.38
CLN3-264ENST00000637985 GFOD1Q9NXC2 390 aa12.69□□□□□ -0.38
CLN3-264ENST00000637985 GHRLQ9UBU3 117 aa12.69□□□□□ -0.38
CLN3-264ENST00000637985 HECTD4Q9Y4D8 3996 aa12.68□□□□□ -0.38
CLN3-264ENST00000637985 SDCBPO00560 298 aaPredicted RBP12.68□□□□□ -0.38
CLN3-264ENST00000637985 HSD17B6O14756 317 aa12.68□□□□□ -0.38
CLN3-264ENST00000637985 CA11O75493 328 aa12.68□□□□□ -0.38
CLN3-264ENST00000637985 GAPDHP04406 335 aaKnown RBP12.68□□□□□ -0.38
CLN3-264ENST00000637985 CDK1P06493 297 aa12.68□□□□□ -0.38
CLN3-264ENST00000637985 TMEM11P17152 192 aa12.68□□□□□ -0.38
CLN3-264ENST00000637985 FOXE3Q13461 319 aa12.68□□□□□ -0.38
CLN3-264ENST00000637985 HES1Q14469 280 aa12.68□□□□□ -0.38
CLN3-264ENST00000637985 C6orf183Q5T699 404 aa12.68□□□□□ -0.38
CLN3-264ENST00000637985 RAB12Q6IQ22 244 aa12.68□□□□□ -0.38
CLN3-264ENST00000637985 TRAT1Q6PIZ9 186 aa12.68□□□□□ -0.38
CLN3-264ENST00000637985 GAPTQ8N292 157 aa12.68□□□□□ -0.38
CLN3-264ENST00000637985 OR11H1Q8NG94 326 aa12.68□□□□□ -0.38
CLN3-264ENST00000637985 MND1Q9BWT6 205 aa12.68□□□□□ -0.38
CLN3-264ENST00000637985 ETAA1Q9NY74 926 aa12.68□□□□□ -0.38
CLN3-264ENST00000637985 TRAPPC2LQ9UL33 140 aa12.68□□□□□ -0.38
CLN3-264ENST00000637985 A0A1W2PPE3 182 aa12.67□□□□□ -0.38
CLN3-264ENST00000637985 SPINT2O43291 252 aa12.67□□□□□ -0.38
CLN3-264ENST00000637985 CRTAPO75718 401 aaPredicted RBP12.67□□□□□ -0.38
CLN3-264ENST00000637985 SC5DO75845 299 aa12.67□□□□□ -0.38
CLN3-264ENST00000637985 ELANEP08246 267 aa12.67□□□□□ -0.38
CLN3-264ENST00000637985 MGMTP16455 207 aa12.67□□□□□ -0.38
CLN3-264ENST00000637985 FUT3P21217 361 aa12.67□□□□□ -0.38
CLN3-264ENST00000637985 IL3RAP26951 378 aa12.67□□□□□ -0.38
CLN3-264ENST00000637985 GPR50Q13585 617 aa12.67□□□□□ -0.38
CLN3-264ENST00000637985 EBI3Q14213 229 aa12.67□□□□□ -0.38
CLN3-264ENST00000637985 SYT6Q5T7P8 510 aaPredicted RBP12.67□□□□□ -0.38
CLN3-264ENST00000637985 FAM71E2Q8N5Q1 922 aa12.67□□□□□ -0.38
CLN3-264ENST00000637985 IL17DQ8TAD2 202 aa12.67□□□□□ -0.38
CLN3-264ENST00000637985 DDB2Q92466 427 aa12.67□□□□□ -0.38
CLN3-264ENST00000637985 SELENOIQ9C0D9 397 aa12.67□□□□□ -0.38
CLN3-264ENST00000637985 BANF2Q9H503 90 aa12.67□□□□□ -0.38
CLN3-264ENST00000637985 ISYNA1Q9NPH2 558 aa12.67□□□□□ -0.38
CLN3-264ENST00000637985 SCN3BQ9NY72 215 aa12.67□□□□□ -0.38
CLN3-264ENST00000637985 PEX16Q9Y5Y5 336 aa12.67□□□□□ -0.38
CLN3-264ENST00000637985 KMT2AQ03164 3969 aa12.67□□□□□ -0.38
CLN3-264ENST00000637985 IGHV1-3A0A0C4DH29 117 aa12.66□□□□□ -0.38
CLN3-264ENST00000637985 C12orf77C9JDV5 145 aa12.66□□□□□ -0.38
CLN3-264ENST00000637985 AP4M1O00189 453 aa12.66□□□□□ -0.38
CLN3-264ENST00000637985 IGKV1D-33P01593 117 aa12.66□□□□□ -0.38
CLN3-264ENST00000637985 IGKV1-33P01594 117 aa12.66□□□□□ -0.38
CLN3-264ENST00000637985 UBBP0CG47 229 aa12.66□□□□□ -0.38
CLN3-264ENST00000637985 IGHV4-30-4P0DP06 118 aa12.66□□□□□ -0.38
CLN3-264ENST00000637985 ACSM3Q53FZ2 586 aa12.66□□□□□ -0.38
CLN3-264ENST00000637985 C6orf141Q5SZD1 244 aa12.66□□□□□ -0.38
CLN3-264ENST00000637985 ASPHD1Q5U4P2 390 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms