RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 PCNPQ8WW12 178 aaKnown RBP15.47■□□□□ 0.07
CLN3-263ENST00000637871 SAT2Q96F10 170 aaPredicted RBP15.47■□□□□ 0.07
CLN3-263ENST00000637871 CXorf58Q96LI9 332 aa15.47■□□□□ 0.07
CLN3-263ENST00000637871 RAB19A4D1S5 217 aa15.46■□□□□ 0.07
CLN3-263ENST00000637871 MSGN1A6NI15 193 aa15.46■□□□□ 0.07
CLN3-263ENST00000637871 H0YL77 283 aa15.46■□□□□ 0.07
CLN3-263ENST00000637871 SIRPB1O00241 398 aa15.46■□□□□ 0.07
CLN3-263ENST00000637871 PGLYRP1O75594 196 aaPredicted RBP15.46■□□□□ 0.07
CLN3-263ENST00000637871 ZNF205O95201 554 aa15.46■□□□□ 0.07
CLN3-263ENST00000637871 F2RP25116 425 aa15.46■□□□□ 0.07
CLN3-263ENST00000637871 FABP6P51161 128 aa15.46■□□□□ 0.07
CLN3-263ENST00000637871 SELENOHQ8IZQ5 122 aaKnown RBP15.46■□□□□ 0.07
CLN3-263ENST00000637871 STPG2Q8N412 459 aa15.46■□□□□ 0.07
CLN3-263ENST00000637871 ZNF808Q8N4W9 903 aaPredicted RBP15.46■□□□□ 0.07
CLN3-263ENST00000637871 SLC35G3Q8N808 338 aa15.46■□□□□ 0.07
CLN3-263ENST00000637871 OR4D5Q8NGN0 318 aa15.46■□□□□ 0.07
CLN3-263ENST00000637871 TOLLIPQ9H0E2 274 aa15.46■□□□□ 0.07
CLN3-263ENST00000637871 ELOVL5Q9NYP7 299 aa15.46■□□□□ 0.07
CLN3-263ENST00000637871 LSM5Q9Y4Y9 91 aaKnown RBP15.46■□□□□ 0.07
CLN3-263ENST00000637871 BORCS7-ASMTA0A0B4J1R7 106 aa15.46■□□□□ 0.06
CLN3-263ENST00000637871 OOEPA6NGQ2 149 aa15.46■□□□□ 0.06
CLN3-263ENST00000637871 A6NLC8 198 aa15.46■□□□□ 0.06
CLN3-263ENST00000637871 RNF212BA8MTL3 300 aa15.46■□□□□ 0.06
CLN3-263ENST00000637871 TEX46H3BTG2 121 aa15.46■□□□□ 0.06
CLN3-263ENST00000637871 HEXAP06865 529 aa15.46■□□□□ 0.06
CLN3-263ENST00000637871 RCC1P18754 421 aaPredicted RBP15.46■□□□□ 0.06
CLN3-263ENST00000637871 M6PRP20645 277 aa15.46■□□□□ 0.06
CLN3-263ENST00000637871 SELENOVP59797 346 aa15.46■□□□□ 0.06
CLN3-263ENST00000637871 WDR82Q6UXN9 313 aa15.46■□□□□ 0.06
CLN3-263ENST00000637871 PPP1R35Q8TAP8 253 aa15.46■□□□□ 0.06
CLN3-263ENST00000637871 PLPPR1Q8TBJ4 325 aa15.46■□□□□ 0.06
CLN3-263ENST00000637871 CCL28Q9NRJ3 127 aa15.46■□□□□ 0.06
CLN3-263ENST00000637871 IGKV1D-13A0A0B4J2D9 117 aa15.45■□□□□ 0.06
CLN3-263ENST00000637871 A1L4Q6 167 aa15.45■□□□□ 0.06
CLN3-263ENST00000637871 CLDN14O95500 239 aa15.45■□□□□ 0.06
CLN3-263ENST00000637871 IGKV1-13P0DP09 117 aa15.45■□□□□ 0.06
CLN3-263ENST00000637871 MEX3BQ6ZN04 569 aaKnown RBP15.45■□□□□ 0.06
CLN3-263ENST00000637871 UBAC2Q8NBM4 344 aa15.45■□□□□ 0.06
CLN3-263ENST00000637871 BARX1Q9HBU1 254 aaPredicted RBP15.45■□□□□ 0.06
CLN3-263ENST00000637871 JKAMPQ9P055 326 aa15.45■□□□□ 0.06
CLN3-263ENST00000637871 A8MXE2 369 aa15.44■□□□□ 0.06
CLN3-263ENST00000637871 HSPA12AO43301 675 aa15.44■□□□□ 0.06
CLN3-263ENST00000637871 Q6ZR03 302 aa15.44■□□□□ 0.06
CLN3-263ENST00000637871 LHFPL5Q8TAF8 219 aa15.44■□□□□ 0.06
CLN3-263ENST00000637871 MARC2Q969Z3 335 aa15.44■□□□□ 0.06
CLN3-263ENST00000637871 S100PBPQ96BU1 408 aa15.44■□□□□ 0.06
CLN3-263ENST00000637871 LURAP1Q96LR2 239 aa15.44■□□□□ 0.06
CLN3-263ENST00000637871 TAF9BQ9HBM6 251 aa15.44■□□□□ 0.06
CLN3-263ENST00000637871 HSD17B6O14756 317 aa15.43■□□□□ 0.06
CLN3-263ENST00000637871 SCGB1D2O95969 90 aa15.43■□□□□ 0.06
CLN3-263ENST00000637871 NKX2-1P43699 371 aaPredicted RBP15.43■□□□□ 0.06
CLN3-263ENST00000637871 ASCL1P50553 236 aa15.43■□□□□ 0.06
CLN3-263ENST00000637871 KLF3P57682 345 aaPredicted RBP15.43■□□□□ 0.06
CLN3-263ENST00000637871 BLOC1S1P78537 153 aa15.43■□□□□ 0.06
CLN3-263ENST00000637871 TFF3Q07654 80 aa15.43■□□□□ 0.06
CLN3-263ENST00000637871 FAM27E3Q08E93 113 aa15.43■□□□□ 0.06
CLN3-263ENST00000637871 FOXRED2Q8IWF2 684 aa15.43■□□□□ 0.06
CLN3-263ENST00000637871 LSM10Q969L4 123 aaKnown RBP15.43■□□□□ 0.06
CLN3-263ENST00000637871 GALMQ96C23 342 aa15.43■□□□□ 0.06
CLN3-263ENST00000637871 SLC25A31Q9H0C2 315 aa15.43■□□□□ 0.06
CLN3-263ENST00000637871 TAS2R3Q9NYW6 316 aa15.43■□□□□ 0.06
CLN3-263ENST00000637871 HCFC1P51610 2035 aa15.43■□□□□ 0.06
CLN3-263ENST00000637871 A0A1B0GU03 582 aa15.43■□□□□ 0.06
CLN3-263ENST00000637871 C19orf84I3L1E1 186 aa15.43■□□□□ 0.06
CLN3-263ENST00000637871 M0R1B8 84 aa15.43■□□□□ 0.06
CLN3-263ENST00000637871 SERPINE2P07093 398 aa15.43■□□□□ 0.06
CLN3-263ENST00000637871 TMEM33P57088 247 aa15.43■□□□□ 0.06
CLN3-263ENST00000637871 NKX6-1P78426 367 aaPredicted RBP15.43■□□□□ 0.06
CLN3-263ENST00000637871 NMSQ5H8A3 153 aa15.43■□□□□ 0.06
CLN3-263ENST00000637871 TCTEX1D1Q8N7M0 179 aa15.43■□□□□ 0.06
CLN3-263ENST00000637871 PLEKHF2Q9H8W4 249 aa15.43■□□□□ 0.06
CLN3-263ENST00000637871 KCNJ16Q9NPI9 418 aa15.43■□□□□ 0.06
CLN3-263ENST00000637871 FAM212BQ9NTI7 297 aaPredicted RBP15.43■□□□□ 0.06
CLN3-263ENST00000637871 LIN7CQ9NUP9 197 aaKnown RBP15.43■□□□□ 0.06
CLN3-263ENST00000637871 SPTAN1Q13813 2472 aaKnown RBP15.42■□□□□ 0.06
CLN3-263ENST00000637871 IGLV3-9A0A075B6K5 115 aa15.42■□□□□ 0.06
CLN3-263ENST00000637871 AGAP20933 346 aa15.42■□□□□ 0.06
CLN3-263ENST00000637871 CCKARP32238 428 aa15.42■□□□□ 0.06
CLN3-263ENST00000637871 ZNF83P51522 516 aa15.42■□□□□ 0.06
CLN3-263ENST00000637871 FAM74A1Q5RGS3 127 aa15.42■□□□□ 0.06
CLN3-263ENST00000637871 IL1F10Q8WWZ1 152 aa15.42■□□□□ 0.06
CLN3-263ENST00000637871 ARL11Q969Q4 196 aa15.42■□□□□ 0.06
CLN3-263ENST00000637871 ARV1Q9H2C2 271 aa15.42■□□□□ 0.06
CLN3-263ENST00000637871 NCOR1P1Q9H4R4 102 aa15.42■□□□□ 0.06
CLN3-263ENST00000637871 OR14J1Q9UGF5 321 aa15.42■□□□□ 0.06
CLN3-263ENST00000637871 RBM7Q9Y580 266 aaKnown RBP15.42■□□□□ 0.06
CLN3-263ENST00000637871 CLDN1O95832 211 aa15.41■□□□□ 0.06
CLN3-263ENST00000637871 ID3Q02535 119 aa15.41■□□□□ 0.06
CLN3-263ENST00000637871 TESK1Q15569 626 aa15.41■□□□□ 0.06
CLN3-263ENST00000637871 IL34Q6ZMJ4 242 aa15.41■□□□□ 0.06
CLN3-263ENST00000637871 OR52M1Q8NGK5 317 aa15.41■□□□□ 0.06
CLN3-263ENST00000637871 ERGIC1Q969X5 290 aa15.41■□□□□ 0.06
CLN3-263ENST00000637871 RAB9BQ9NP90 201 aa15.41■□□□□ 0.06
CLN3-263ENST00000637871 FBXL17Q9UF56 701 aa15.41■□□□□ 0.06
CLN3-263ENST00000637871 SRRM5B3KS81 715 aa15.4■□□□□ 0.06
CLN3-263ENST00000637871 KCNAB3O43448 404 aa15.4■□□□□ 0.06
CLN3-263ENST00000637871 ATG12O94817 140 aa15.4■□□□□ 0.06
CLN3-263ENST00000637871 CRYZL1O95825 349 aa15.4■□□□□ 0.06
CLN3-263ENST00000637871 SEC11BP0C7V7 166 aa15.4■□□□□ 0.06
CLN3-263ENST00000637871 FAM157CP0CG43 387 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms