RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 UNQ6190/PRO20217Q6UXQ8 127 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 LINC00523Q86TU6 105 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 LRRC28Q86X40 367 aaPredicted RBP0.29□□□□□ -2.36
SCN1A-208ENST00000625916 SPICQ8N5J4 248 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 ASCC1Q8N9N2 400 aaKnown RBP0.29□□□□□ -2.36
SCN1A-208ENST00000625916 OR4K17Q8NGC6 315 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 OR8B12Q8NGG6 310 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 FGF13Q92913 245 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 CIB1Q99828 191 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 CDCA4Q9BXL8 241 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 FBXL15Q9H469 300 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 TRPM6Q9BX84 2022 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 FSIP2Q5CZC0 6907 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 TNIKQ9UKE5 1360 aa0.29□□□□□ -2.36
SCN1A-208ENST00000625916 DISP1Q96F81 1524 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 SDK1Q7Z5N4 2213 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 TRBV6-5A0A0K0K1A5 114 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 GRIFINA4D1Z8 144 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 J3QLI3 93 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 RFXANKO14593 260 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 MBP02144 154 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 ESDP10768 282 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 CTSEP14091 401 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 TSPOP30536 169 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 CCR7P32248 378 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 DEKP35659 375 aaKnown RBP0.28□□□□□ -2.36
SCN1A-208ENST00000625916 RANBP1P43487 201 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 SPAG1Q07617 926 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 SLC38A11Q08AI6 406 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 DEFB115Q30KQ5 88 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 HSP90B2PQ58FF3 399 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 ACTL10Q5JWF8 245 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 FAM162BQ5T6X4 162 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 ASCL4Q6XD76 172 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 FAM183BPQ6ZVS7 135 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 FAM19A1Q7Z5A9 133 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 SUN5Q8TC36 379 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 KIAA1143Q96AT1 154 aaPredicted RBP0.28□□□□□ -2.36
SCN1A-208ENST00000625916 ZNF707Q96C28 371 aaPredicted RBP0.28□□□□□ -2.36
SCN1A-208ENST00000625916 MAP1LC3CQ9BXW4 147 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 SYT4Q9H2B2 425 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 C11orf49Q9H6J7 331 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 C8orf4Q9NR00 106 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 SNX12Q9UMY4 172 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 ZNF532Q9HCE3 1301 aa0.28□□□□□ -2.36
SCN1A-208ENST00000625916 YLPM1P49750 1951 aaKnown RBP0.28□□□□□ -2.36
SCN1A-208ENST00000625916 ZNF638Q14966 1978 aaKnown RBP0.27□□□□□ -2.37
SCN1A-208ENST00000625916 TMSB15BA0A087X1C1 80 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 TRAV41A0A0B4J266 112 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 IGKV1-9A0A0C4DH69 117 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 A0A1W2PPV4 95 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 RFPL4AA6NLU0 287 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 ZNF705FA8MVS1 300 aaPredicted RBP0.27□□□□□ -2.37
SCN1A-208ENST00000625916 RFPL4AL1F8VTS6 287 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 F8W036 122 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 HCRTO43612 131 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 ZMPSTE24O75844 475 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 AKR1C4P17516 323 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 SRMP19623 302 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 CRHBPP24387 322 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 ATP6V0CP27449 155 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 RPA3P35244 121 aaPredicted RBP0.27□□□□□ -2.37
SCN1A-208ENST00000625916 IDH3GP51553 393 aaPredicted RBP0.27□□□□□ -2.37
SCN1A-208ENST00000625916 TMEM258P61165 79 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 CTAG1AP78358 180 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 PAFAH1B3Q15102 231 aaKnown RBP0.27□□□□□ -2.37
SCN1A-208ENST00000625916 PDGFRLQ15198 375 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 TRIP13Q15645 432 aaPredicted RBP0.27□□□□□ -2.37
SCN1A-208ENST00000625916 NNATQ16517 81 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 PABPC1L2AQ5JQF8 200 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 CHCHD2P9Q5T1J5 151 aaPredicted RBP0.27□□□□□ -2.37
SCN1A-208ENST00000625916 OR5D18Q8NGL1 313 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 OR5J2Q8NH18 312 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 OR2AE1Q8NHA4 323 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 SLC35G5Q96KT7 338 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 PRSS27Q9BQR3 290 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 MIEN1Q9BRT3 115 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 C1QTNF6Q9BXI9 259 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 STK38LQ9Y2H1 464 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 PLCH2O75038 1416 aa0.27□□□□□ -2.37
SCN1A-208ENST00000625916 ARHGAP32A7KAX9 2087 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 MEIKINA0A087WXM9 373 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 LINC00862A6NCI5 91 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 TRIM64CA6NLI5 447 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 E7EWF7 191 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 H3BSA7 217 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 CASC3O15234 703 aaKnown RBP0.26□□□□□ -2.37
SCN1A-208ENST00000625916 CDK14O94921 469 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 C1QCP02747 245 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 TSPEAR-AS2P59090 65 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 GBE1Q04446 702 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 GLO1Q04760 184 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 STK38Q15208 465 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 TRAM1Q15629 374 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 TMEM42Q69YG0 159 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 FAHD1Q6P587 224 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 SLC35E3Q7Z769 313 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 LHFPL1Q86WI0 220 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 PDCL2Q8N4E4 241 aa0.26□□□□□ -2.37
SCN1A-208ENST00000625916 OR4A15Q8NGL6 344 aa0.26□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms