RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 TMEM50BP56557 158 aa12.98□□□□□ -0.33
LSM4-206ENST00000600289 HTD2P86397 168 aa12.98□□□□□ -0.33
LSM4-206ENST00000600289 ZNF816Q0VGE8 651 aaPredicted RBP12.98□□□□□ -0.33
LSM4-206ENST00000600289 STEAP3Q658P3 488 aa12.98□□□□□ -0.33
LSM4-206ENST00000600289 OR8H3Q8N146 312 aa12.98□□□□□ -0.33
LSM4-206ENST00000600289 Q8N2B8 174 aa12.98□□□□□ -0.33
LSM4-206ENST00000600289 TSPAN14Q8NG11 270 aa12.98□□□□□ -0.33
LSM4-206ENST00000600289 TOMM40LQ969M1 308 aa12.98□□□□□ -0.33
LSM4-206ENST00000600289 RPEQ96AT9 228 aa12.98□□□□□ -0.33
LSM4-206ENST00000600289 OR51E2Q9H255 320 aa12.98□□□□□ -0.33
LSM4-206ENST00000600289 LIN7BQ9HAP6 207 aa12.98□□□□□ -0.33
LSM4-206ENST00000600289 VCX3AQ9NNX9 186 aa12.98□□□□□ -0.33
LSM4-206ENST00000600289 JPT1Q9UK76 154 aa12.98□□□□□ -0.33
LSM4-206ENST00000600289 WNK1Q9H4A3 2382 aa12.97□□□□□ -0.33
LSM4-206ENST00000600289 A0A1W2PPI3 338 aa12.97□□□□□ -0.33
LSM4-206ENST00000600289 FAM90A9PA6NNJ1 464 aa12.97□□□□□ -0.33
LSM4-206ENST00000600289 CD36P16671 472 aa12.97□□□□□ -0.33
LSM4-206ENST00000600289 VEGFCP49767 419 aa12.97□□□□□ -0.33
LSM4-206ENST00000600289 EFNB2P52799 333 aa12.97□□□□□ -0.33
LSM4-206ENST00000600289 HABP2Q14520 560 aaPredicted RBP12.97□□□□□ -0.33
LSM4-206ENST00000600289 SLC25A48Q6ZT89 311 aaKnown RBP12.97□□□□□ -0.33
LSM4-206ENST00000600289 THNSL2Q86YJ6 484 aa12.97□□□□□ -0.33
LSM4-206ENST00000600289 OR10X1Q8NGY0 326 aa12.97□□□□□ -0.33
LSM4-206ENST00000600289 OR1L1Q8NH94 360 aa12.97□□□□□ -0.33
LSM4-206ENST00000600289 CFHR4Q92496 578 aa12.97□□□□□ -0.33
LSM4-206ENST00000600289 KCTD7Q96MP8 289 aa12.97□□□□□ -0.33
LSM4-206ENST00000600289 CITED1Q99966 193 aa12.97□□□□□ -0.33
LSM4-206ENST00000600289 MGAT4AQ9UM21 535 aa12.97□□□□□ -0.33
LSM4-206ENST00000600289 IGHV3-7P01780 117 aa12.96□□□□□ -0.33
LSM4-206ENST00000600289 GADD45AP24522 165 aa12.96□□□□□ -0.33
LSM4-206ENST00000600289 TIMM50Q3ZCQ8 353 aa12.96□□□□□ -0.33
LSM4-206ENST00000600289 Q6ZPA2 131 aa12.96□□□□□ -0.33
LSM4-206ENST00000600289 Q6ZTK2 550 aa12.96□□□□□ -0.33
LSM4-206ENST00000600289 TMEM219Q86XT9 240 aa12.96□□□□□ -0.33
LSM4-206ENST00000600289 UBALD1Q8TB05 177 aa12.96□□□□□ -0.33
LSM4-206ENST00000600289 ST6GALNAC6Q969X2 333 aa12.96□□□□□ -0.33
LSM4-206ENST00000600289 ARHGAP5-AS1Q96IT6 56 aa12.96□□□□□ -0.33
LSM4-206ENST00000600289 CHCHD6Q9BRQ6 235 aa12.96□□□□□ -0.33
LSM4-206ENST00000600289 PECRQ9BY49 303 aa12.96□□□□□ -0.33
LSM4-206ENST00000600289 C12orf4Q9NQ89 552 aa12.96□□□□□ -0.33
LSM4-206ENST00000600289 GNG12Q9UBI6 72 aa12.96□□□□□ -0.33
LSM4-206ENST00000600289 AK3Q9UIJ7 227 aa12.96□□□□□ -0.33
LSM4-206ENST00000600289 IGHV3-43A0A0B4J1X8 118 aa12.95□□□□□ -0.34
LSM4-206ENST00000600289 HSD17B6O14756 317 aa12.95□□□□□ -0.34
LSM4-206ENST00000600289 TXNL1O43396 289 aa12.95□□□□□ -0.34
LSM4-206ENST00000600289 YPEL1O60688 119 aa12.95□□□□□ -0.34
LSM4-206ENST00000600289 TMEM127O75204 238 aa12.95□□□□□ -0.34
LSM4-206ENST00000600289 OR2F2O95006 317 aa12.95□□□□□ -0.34
LSM4-206ENST00000600289 IGHV3-43DP0DP04 118 aa12.95□□□□□ -0.34
LSM4-206ENST00000600289 IL3RAP26951 378 aa12.95□□□□□ -0.34
LSM4-206ENST00000600289 SCAND1P57086 179 aa12.95□□□□□ -0.34
LSM4-206ENST00000600289 PLA2G7Q13093 441 aa12.95□□□□□ -0.34
LSM4-206ENST00000600289 MORN2Q502X0 79 aa12.95□□□□□ -0.34
LSM4-206ENST00000600289 PLAC9Q5JTB6 97 aa12.95□□□□□ -0.34
LSM4-206ENST00000600289 OR2T6Q8NHC8 308 aa12.95□□□□□ -0.34
LSM4-206ENST00000600289 GALMQ96C23 342 aa12.95□□□□□ -0.34
LSM4-206ENST00000600289 AKR1E2Q96JD6 320 aa12.95□□□□□ -0.34
LSM4-206ENST00000600289 RBM14Q96PK6 669 aaKnown RBP12.95□□□□□ -0.34
LSM4-206ENST00000600289 YPEL2Q96QA6 119 aa12.95□□□□□ -0.34
LSM4-206ENST00000600289 ZNF702PQ9H963 129 aa12.95□□□□□ -0.34
LSM4-206ENST00000600289 A0A1W2PPE3 182 aa12.94□□□□□ -0.34
LSM4-206ENST00000600289 RAB27BO00194 218 aa12.94□□□□□ -0.34
LSM4-206ENST00000600289 GAPDHP04406 335 aaKnown RBP12.94□□□□□ -0.34
LSM4-206ENST00000600289 SDC2P34741 201 aa12.94□□□□□ -0.34
LSM4-206ENST00000600289 CT45A1Q5HYN5 189 aa12.94□□□□□ -0.34
LSM4-206ENST00000600289 FAM53AQ6NSI3 398 aaPredicted RBP12.94□□□□□ -0.34
LSM4-206ENST00000600289 SFXN4Q6P4A7 337 aa12.94□□□□□ -0.34
LSM4-206ENST00000600289 PRR18Q8N4B5 295 aa12.94□□□□□ -0.34
LSM4-206ENST00000600289 OR10R2Q8NGX6 335 aa12.94□□□□□ -0.34
LSM4-206ENST00000600289 CT45A3Q8NHU0 189 aa12.94□□□□□ -0.34
LSM4-206ENST00000600289 YIPF6Q96EC8 236 aa12.94□□□□□ -0.34
LSM4-206ENST00000600289 CENPOQ9BU64 300 aa12.94□□□□□ -0.34
LSM4-206ENST00000600289 PRSS22Q9GZN4 317 aa12.94□□□□□ -0.34
LSM4-206ENST00000600289 CHMP1AQ9HD42 196 aaPredicted RBP12.94□□□□□ -0.34
LSM4-206ENST00000600289 OR2S2Q9NQN1 319 aa12.94□□□□□ -0.34
LSM4-206ENST00000600289 ABRACLQ9P1F3 81 aa12.94□□□□□ -0.34
LSM4-206ENST00000600289 IGHV1-3A0A0C4DH29 117 aa12.93□□□□□ -0.34
LSM4-206ENST00000600289 LOC100506127A0A0U1RQW1 187 aa12.93□□□□□ -0.34
LSM4-206ENST00000600289 METTL21EPA6NDL7 271 aa12.93□□□□□ -0.34
LSM4-206ENST00000600289 MFNGO00587 321 aa12.93□□□□□ -0.34
LSM4-206ENST00000600289 TIMM23O14925 209 aa12.93□□□□□ -0.34
LSM4-206ENST00000600289 SLC31A2O15432 143 aa12.93□□□□□ -0.34
LSM4-206ENST00000600289 RGS11O94810 467 aa12.93□□□□□ -0.34
LSM4-206ENST00000600289 LPLP06858 475 aa12.93□□□□□ -0.34
LSM4-206ENST00000600289 FAM106CPP0CH98 169 aa12.93□□□□□ -0.34
LSM4-206ENST00000600289 SLC2A2P11168 524 aaPredicted RBP12.93□□□□□ -0.34
LSM4-206ENST00000600289 ZNF134P52741 427 aa12.93□□□□□ -0.34
LSM4-206ENST00000600289 KRTAP10-3P60369 221 aa12.93□□□□□ -0.34
LSM4-206ENST00000600289 HLA-DRB3P79483 266 aa12.93□□□□□ -0.34
LSM4-206ENST00000600289 EBI3Q14213 229 aa12.93□□□□□ -0.34
LSM4-206ENST00000600289 DIAPH2-AS1Q14236 149 aa12.93□□□□□ -0.34
LSM4-206ENST00000600289 ARL6IP1Q15041 203 aa12.93□□□□□ -0.34
LSM4-206ENST00000600289 MOGAT2Q3SYC2 334 aa12.93□□□□□ -0.34
LSM4-206ENST00000600289 IZUMO1Q8IYV9 350 aa12.93□□□□□ -0.34
LSM4-206ENST00000600289 OR10V1Q8NGI7 309 aa12.93□□□□□ -0.34
LSM4-206ENST00000600289 RTN4IP1Q8WWV3 396 aaPredicted RBP12.93□□□□□ -0.34
LSM4-206ENST00000600289 RAB3CQ96E17 227 aa12.93□□□□□ -0.34
LSM4-206ENST00000600289 CMSS1Q9BQ75 279 aaKnown RBP12.93□□□□□ -0.34
LSM4-206ENST00000600289 SLC25A33Q9BSK2 321 aa12.93□□□□□ -0.34
LSM4-206ENST00000600289 Q9N2K0 584 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms