RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 IDNKQ5T6J7 187 aa12.22□□□□□ -0.45
LIG1-219ENST00000600055 LINC00311Q8N616 119 aa12.22□□□□□ -0.45
LIG1-219ENST00000600055 ZNF439Q8NDP4 499 aa12.22□□□□□ -0.45
LIG1-219ENST00000600055 OR5H6Q8NGV6 325 aa12.22□□□□□ -0.45
LIG1-219ENST00000600055 LINC01006Q8NI28 216 aa12.22□□□□□ -0.45
LIG1-219ENST00000600055 LGALS14Q8TCE9 139 aa12.22□□□□□ -0.45
LIG1-219ENST00000600055 TOMM40LQ969M1 308 aa12.22□□□□□ -0.45
LIG1-219ENST00000600055 PTX4Q96A99 478 aa12.22□□□□□ -0.45
LIG1-219ENST00000600055 RAB3CQ96E17 227 aa12.22□□□□□ -0.45
LIG1-219ENST00000600055 CMSS1Q9BQ75 279 aaKnown RBP12.22□□□□□ -0.45
LIG1-219ENST00000600055 FUNDC2Q9BWH2 189 aa12.22□□□□□ -0.45
LIG1-219ENST00000600055 ATG5Q9H1Y0 275 aa12.22□□□□□ -0.45
LIG1-219ENST00000600055 BEX1Q9HBH7 125 aa12.22□□□□□ -0.45
LIG1-219ENST00000600055 RAB9BQ9NP90 201 aa12.22□□□□□ -0.45
LIG1-219ENST00000600055 OR2S2Q9NQN1 319 aa12.22□□□□□ -0.45
LIG1-219ENST00000600055 TRBV6-6A0A0A6YYG2 114 aa12.21□□□□□ -0.45
LIG1-219ENST00000600055 CLPSL1A2RUU4 121 aa12.21□□□□□ -0.45
LIG1-219ENST00000600055 TSPAN9O75954 239 aa12.21□□□□□ -0.45
LIG1-219ENST00000600055 PPP1CCP36873 323 aaKnown RBP12.21□□□□□ -0.45
LIG1-219ENST00000600055 MADCAM1Q13477 382 aa12.21□□□□□ -0.45
LIG1-219ENST00000600055 MORN2Q502X0 79 aa12.21□□□□□ -0.45
LIG1-219ENST00000600055 CT45A1Q5HYN5 189 aa12.21□□□□□ -0.45
LIG1-219ENST00000600055 ZNF554Q86TJ5 538 aa12.21□□□□□ -0.45
LIG1-219ENST00000600055 OR13F1Q8NGS4 319 aa12.21□□□□□ -0.45
LIG1-219ENST00000600055 CT45A3Q8NHU0 189 aa12.21□□□□□ -0.45
LIG1-219ENST00000600055 RIMS4Q9H426 269 aaPredicted RBP12.21□□□□□ -0.45
LIG1-219ENST00000600055 Q9N2K0 584 aa12.21□□□□□ -0.45
LIG1-219ENST00000600055 ELF5Q9UKW6 265 aaPredicted RBP12.21□□□□□ -0.45
LIG1-219ENST00000600055 SIGLEC9Q9Y336 463 aa12.21□□□□□ -0.45
LIG1-219ENST00000600055 MMP24Q9Y5R2 645 aa12.21□□□□□ -0.45
LIG1-219ENST00000600055 ANK2Q01484 3957 aa12.2□□□□□ -0.46
LIG1-219ENST00000600055 A0A1W2PPI3 338 aa12.2□□□□□ -0.46
LIG1-219ENST00000600055 METTL21EPA6NDL7 271 aa12.2□□□□□ -0.46
LIG1-219ENST00000600055 OOSP1A8MZH6 123 aa12.2□□□□□ -0.46
LIG1-219ENST00000600055 MFNGO00587 321 aa12.2□□□□□ -0.46
LIG1-219ENST00000600055 TIMM23O14925 209 aa12.2□□□□□ -0.46
LIG1-219ENST00000600055 HIST1H1DP16402 221 aaKnown RBP12.2□□□□□ -0.46
LIG1-219ENST00000600055 BRS3P32247 399 aa12.2□□□□□ -0.46
LIG1-219ENST00000600055 RPS19P39019 145 aaKnown RBP12.2□□□□□ -0.46
LIG1-219ENST00000600055 REG1BP48304 166 aa12.2□□□□□ -0.46
LIG1-219ENST00000600055 HTD2P86397 168 aa12.2□□□□□ -0.46
LIG1-219ENST00000600055 TMEM30BQ3MIR4 351 aa12.2□□□□□ -0.46
LIG1-219ENST00000600055 LIAT1Q6ZQX7 453 aa12.2□□□□□ -0.46
LIG1-219ENST00000600055 SLC25A48Q6ZT89 311 aaKnown RBP12.2□□□□□ -0.46
LIG1-219ENST00000600055 MOB1BQ7L9L4 216 aa12.2□□□□□ -0.46
LIG1-219ENST00000600055 DRAM1Q8N682 238 aa12.2□□□□□ -0.46
LIG1-219ENST00000600055 C8orf31Q8N9H6 132 aa12.2□□□□□ -0.46
LIG1-219ENST00000600055 IL1F10Q8WWZ1 152 aa12.2□□□□□ -0.46
LIG1-219ENST00000600055 GALMQ96C23 342 aa12.2□□□□□ -0.46
LIG1-219ENST00000600055 OCSTAMPQ9BR26 566 aa12.2□□□□□ -0.46
LIG1-219ENST00000600055 ZNF747Q9BV97 191 aa12.2□□□□□ -0.46
LIG1-219ENST00000600055 C16orf95Q9H693 158 aa12.2□□□□□ -0.46
LIG1-219ENST00000600055 RAB18Q9NP72 206 aa12.2□□□□□ -0.46
LIG1-219ENST00000600055 C12orf4Q9NQ89 552 aa12.2□□□□□ -0.46
LIG1-219ENST00000600055 ABRACLQ9P1F3 81 aa12.2□□□□□ -0.46
LIG1-219ENST00000600055 JPT1Q9UK76 154 aa12.2□□□□□ -0.46
LIG1-219ENST00000600055 RNF114Q9Y508 228 aa12.2□□□□□ -0.46
LIG1-219ENST00000600055 POM121CA8CG34 1229 aa12.19□□□□□ -0.46
LIG1-219ENST00000600055 HSD17B6O14756 317 aa12.19□□□□□ -0.46
LIG1-219ENST00000600055 NOL3O60936 208 aaKnown RBP12.19□□□□□ -0.46
LIG1-219ENST00000600055 TFAP2AP05549 437 aa12.19□□□□□ -0.46
LIG1-219ENST00000600055 SCTP09683 121 aa12.19□□□□□ -0.46
LIG1-219ENST00000600055 CD3GP09693 182 aa12.19□□□□□ -0.46
LIG1-219ENST00000600055 MNDAP41218 407 aa12.19□□□□□ -0.46
LIG1-219ENST00000600055 ALDH3B2P48448 385 aa12.19□□□□□ -0.46
LIG1-219ENST00000600055 NCS1P62166 190 aa12.19□□□□□ -0.46
LIG1-219ENST00000600055 HLA-DRB3P79483 266 aa12.19□□□□□ -0.46
LIG1-219ENST00000600055 SRSF4Q08170 494 aaKnown RBP12.19□□□□□ -0.46
LIG1-219ENST00000600055 Q3ZCU0 254 aa12.19□□□□□ -0.46
LIG1-219ENST00000600055 CCDC144NLQ6NUI1 221 aa12.19□□□□□ -0.46
LIG1-219ENST00000600055 OR56B4Q8NH76 319 aa12.19□□□□□ -0.46
LIG1-219ENST00000600055 CAPSLQ8WWF8 208 aa12.19□□□□□ -0.46
LIG1-219ENST00000600055 CFHR4Q92496 578 aa12.19□□□□□ -0.46
LIG1-219ENST00000600055 ST6GALNAC6Q969X2 333 aa12.19□□□□□ -0.46
LIG1-219ENST00000600055 NAA50Q9GZZ1 169 aaKnown RBP12.19□□□□□ -0.46
LIG1-219ENST00000600055 PITPNC1Q9UKF7 332 aa12.19□□□□□ -0.46
LIG1-219ENST00000600055 STAB1Q9NY15 2570 aa12.18□□□□□ -0.46
LIG1-219ENST00000600055 IGHV3-72A0A0B4J1Y9 119 aa12.18□□□□□ -0.46
LIG1-219ENST00000600055 A0A1B0GUS0 222 aa12.18□□□□□ -0.46
LIG1-219ENST00000600055 FAM90A9PA6NNJ1 464 aa12.18□□□□□ -0.46
LIG1-219ENST00000600055 HAX1O00165 279 aa12.18□□□□□ -0.46
LIG1-219ENST00000600055 YPEL1O60688 119 aa12.18□□□□□ -0.46
LIG1-219ENST00000600055 SNRNP70P08621 437 aaKnown RBP12.18□□□□□ -0.46
LIG1-219ENST00000600055 RAB7AP51149 207 aa12.18□□□□□ -0.46
LIG1-219ENST00000600055 ARHGDIBP52566 201 aa12.18□□□□□ -0.46
LIG1-219ENST00000600055 KRTAP10-3P60369 221 aa12.18□□□□□ -0.46
LIG1-219ENST00000600055 VBP1P61758 197 aa12.18□□□□□ -0.46
LIG1-219ENST00000600055 ZNF816Q0VGE8 651 aaPredicted RBP12.18□□□□□ -0.46
LIG1-219ENST00000600055 CDNFQ49AH0 187 aa12.18□□□□□ -0.46
LIG1-219ENST00000600055 Q6ZS46 218 aa12.18□□□□□ -0.46
LIG1-219ENST00000600055 MOB3BQ86TA1 216 aa12.18□□□□□ -0.46
LIG1-219ENST00000600055 OR4C13Q8NGP0 309 aa12.18□□□□□ -0.46
LIG1-219ENST00000600055 MAFIPQ8WZ33 124 aa12.18□□□□□ -0.46
LIG1-219ENST00000600055 SLC25A38Q96DW6 304 aa12.18□□□□□ -0.46
LIG1-219ENST00000600055 RBMXL1Q96E39 390 aaKnown RBP12.18□□□□□ -0.46
LIG1-219ENST00000600055 YPEL2Q96QA6 119 aa12.18□□□□□ -0.46
LIG1-219ENST00000600055 NPFFR1Q9GZQ6 430 aa12.18□□□□□ -0.46
LIG1-219ENST00000600055 PARP12Q9H0J9 701 aaKnown RBP12.18□□□□□ -0.46
LIG1-219ENST00000600055 RHBDL2Q9NX52 303 aa12.18□□□□□ -0.46
LIG1-219ENST00000600055 OR1A1Q9P1Q5 309 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms