RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 CST4P01036 141 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 TNFP01375 233 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 IGHV2-5P01817 119 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 MT-ND4LP03901 98 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 GAPDHP04406 335 aaKnown RBP3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 IFNA6P05013 189 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 SMIM6P0DI80 62 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 GP9P14770 177 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 HPGDP15428 266 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 ZNF44P15621 663 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 RCC1P18754 421 aaPredicted RBP3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 PGCP20142 388 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 CXCR1P25024 350 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 S100PP25815 95 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 GRPRP30550 384 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 ACTR1BP42025 376 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 RPL35P42766 123 aaKnown RBP3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 GABRA4P48169 554 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 KCNJ3P48549 501 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 DNASE1L1P49184 302 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 SUCLG1P53597 346 aaKnown RBP3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 PRRX1P54821 245 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 XGP55808 180 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 RAB5BP61020 215 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 RAP1BP61224 184 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 RAP1AP62834 184 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 SURF2Q15527 256 aaPredicted RBP3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 CD226Q15762 336 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 MS4A18Q3C1V0 323 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 CBLN3Q6UW01 205 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 Q6ZSR3 168 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 COX8CQ7Z4L0 72 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 TRAPPC6BQ86SZ2 158 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 NAA40Q86UY6 237 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 SLC22A24Q8N4F4 322 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 ZSCAN4Q8NAM6 433 aaPredicted RBP3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 OR4D6Q8NGJ1 314 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 OR5D14Q8NGL3 314 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 OR9A4Q8NGU2 314 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 OR10R2Q8NGX6 335 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 CCL4L1Q8NHW4 92 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 NUBPLQ8TB37 319 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 PAQR8Q8TEZ7 354 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 SSC4DQ8WTU2 575 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 TOMM40LQ969M1 308 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 ADIPOR1Q96A54 375 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 S1PR3Q99500 378 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 TCEAL7Q9BRU2 100 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 RTBDNQ9BSG5 229 aaPredicted RBP3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 GPR61Q9BZJ8 451 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 PKIBQ9C010 78 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 SELENOIQ9C0D9 397 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 SYT4Q9H2B2 425 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 OR51M1Q9H341 326 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 ZNF665Q9H7R5 613 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 METTL7AQ9H8H3 244 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 RHOFQ9HBH0 211 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 CRLF2Q9HC73 371 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 TREM1Q9NP99 234 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 GLRX2Q9NS18 164 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 TAS2R4Q9NYW5 299 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 METTL1Q9UBP6 276 aaKnown RBP3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 GHRLQ9UBU3 117 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 C19orf25Q9UFG5 118 aaPredicted RBP3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 CACFD1Q9UGQ2 172 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 CELA1Q9UNI1 258 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 FARSAQ9Y285 508 aaKnown RBP3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 KPTNQ9Y664 436 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 HTTP42858 3142 aa3.13□□□□□ -1.91
SMCHD1-208ENST00000583344 TMED7-TICAM2A0A0A6YYA0 188 aa3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 TMEM269A0A1B0GVZ9 245 aa3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 TMEM235A6NFC5 223 aa3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 ZNF716A6NP11 495 aa3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 FOXI3A8MTJ6 420 aaPredicted RBP3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 A8MVM7 634 aa3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 ZNF705EA8MWA4 302 aaPredicted RBP3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 C1orf196B1AJZ1 125 aa3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 EEF1E1-BLOC1S5C9J1V9 151 aa3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 FTCDNL1E5RQL4 147 aa3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 CCSO14618 274 aa3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 SIGLEC5O15389 551 aa3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 SLC31A1O15431 190 aa3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 YKT6O15498 198 aa3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 RRP8O43159 456 aaKnown RBP3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 MBTPS2O43462 519 aa3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 HCRTR1O43613 425 aa3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 GATCO43716 136 aaKnown RBP3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 SLC16A7O60669 478 aa3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 EIF1BO60739 113 aaKnown RBP3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 TTRP02766 147 aa3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 IGKV3-11P04433 115 aa3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 GLAP06280 429 aa3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 S100A9P06702 114 aaKnown RBP3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 DCNP07585 359 aaKnown RBP3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 SEC11BP0C7V7 166 aa3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 PET100P0DJ07 73 aa3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 SLC2A1P11166 492 aa3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 GP1BBP13224 206 aa3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 CD59P13987 128 aa3.12□□□□□ -1.91
SMCHD1-208ENST00000583344 PVRP15151 417 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms