RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 SKP2Q13309 424 aa1.61□□□□□ -2.15
SS18-214ENST00000580003 FAM45AQ8TCE6 357 aa1.61□□□□□ -2.15
SS18-214ENST00000580003 IFT81Q8WYA0 676 aa1.61□□□□□ -2.15
SS18-214ENST00000580003 UPK3BQ9BT76 320 aa1.61□□□□□ -2.15
SS18-214ENST00000580003 PECRQ9BY49 303 aa1.61□□□□□ -2.15
SS18-214ENST00000580003 NCKAP5O14513 1909 aa1.6□□□□□ -2.15
SS18-214ENST00000580003 H3BSA7 217 aa1.6□□□□□ -2.15
SS18-214ENST00000580003 LY6HO94772 140 aa1.6□□□□□ -2.15
SS18-214ENST00000580003 PPP1CCP36873 323 aaKnown RBP1.6□□□□□ -2.15
SS18-214ENST00000580003 PDGFRLQ15198 375 aa1.6□□□□□ -2.15
SS18-214ENST00000580003 TPRXLQ17RH7 258 aa1.6□□□□□ -2.15
SS18-214ENST00000580003 MRPL51Q4U2R6 128 aaKnown RBP1.6□□□□□ -2.15
SS18-214ENST00000580003 CNPY4Q8N129 248 aa1.6□□□□□ -2.15
SS18-214ENST00000580003 OR11H1Q8NG94 326 aa1.6□□□□□ -2.15
SS18-214ENST00000580003 OR5D18Q8NGL1 313 aa1.6□□□□□ -2.15
SS18-214ENST00000580003 CATSPER2Q96P56 530 aa1.6□□□□□ -2.15
SS18-214ENST00000580003 NAA38Q9BRA0 125 aaKnown RBP1.6□□□□□ -2.15
SS18-214ENST00000580003 MND1Q9BWT6 205 aa1.6□□□□□ -2.15
SS18-214ENST00000580003 IFT46Q9NQC8 304 aa1.6□□□□□ -2.15
SS18-214ENST00000580003 DOK5Q9P104 306 aa1.6□□□□□ -2.15
SS18-214ENST00000580003 ALG5Q9Y673 324 aa1.6□□□□□ -2.15
SS18-214ENST00000580003 EPPINO95925 133 aa1.59□□□□□ -2.15
SS18-214ENST00000580003 CSTAP01040 98 aa1.59□□□□□ -2.15
SS18-214ENST00000580003 LYNX1P0DP58 116 aa1.59□□□□□ -2.15
SS18-214ENST00000580003 CTSEP14091 401 aa1.59□□□□□ -2.15
SS18-214ENST00000580003 SLC25A16P16260 332 aa1.59□□□□□ -2.15
SS18-214ENST00000580003 ATF1P18846 271 aa1.59□□□□□ -2.15
SS18-214ENST00000580003 CCNOP22674 350 aa1.59□□□□□ -2.15
SS18-214ENST00000580003 Q6ZRN7 208 aaPredicted RBP1.59□□□□□ -2.15
SS18-214ENST00000580003 OR11L1Q8NGX0 322 aa1.59□□□□□ -2.15
SS18-214ENST00000580003 SPZ1Q9BXG8 430 aa1.59□□□□□ -2.15
SS18-214ENST00000580003 CDCA4Q9BXL8 241 aa1.59□□□□□ -2.15
SS18-214ENST00000580003 MYO15BQ96JP2 1530 aa1.58□□□□□ -2.16
SS18-214ENST00000580003 DHRS12A0PJE2 317 aa1.58□□□□□ -2.16
SS18-214ENST00000580003 J3QQQ9 107 aa1.58□□□□□ -2.16
SS18-214ENST00000580003 CRXO43186 299 aaPredicted RBP1.58□□□□□ -2.16
SS18-214ENST00000580003 PEBP1P30086 187 aaKnown RBP1.58□□□□□ -2.16
SS18-214ENST00000580003 RPL26P61254 145 aaKnown RBP1.58□□□□□ -2.16
SS18-214ENST00000580003 HENMT1Q5T8I9 393 aaKnown RBP1.58□□□□□ -2.16
SS18-214ENST00000580003 AGTRAPQ6RW13 159 aa1.58□□□□□ -2.16
SS18-214ENST00000580003 RASL11AQ6T310 242 aa1.58□□□□□ -2.16
SS18-214ENST00000580003 ZNF283Q8N7M2 679 aa1.58□□□□□ -2.16
SS18-214ENST00000580003 HINT2Q9BX68 163 aa1.58□□□□□ -2.16
SS18-214ENST00000580003 C1QTNF6Q9BXI9 259 aa1.58□□□□□ -2.16
SS18-214ENST00000580003 C16orf95Q9H693 158 aa1.58□□□□□ -2.16
SS18-214ENST00000580003 CLEC2DQ9UHP7 191 aa1.58□□□□□ -2.16
SS18-214ENST00000580003 RPL26L1Q9UNX3 145 aaKnown RBP1.58□□□□□ -2.16
SS18-214ENST00000580003 PUS1Q9Y606 427 aaKnown RBP eCLIP1.58□□□□□ -2.16
SS18-214ENST00000580003 H3BPC8 53 aa1.57□□□□□ -2.16
SS18-214ENST00000580003 CDK14O94921 469 aa1.57□□□□□ -2.16
SS18-214ENST00000580003 AQP5P55064 265 aa1.57□□□□□ -2.16
SS18-214ENST00000580003 BSXQ3C1V8 233 aa1.57□□□□□ -2.16
SS18-214ENST00000580003 OR5P2Q8WZ92 322 aa1.57□□□□□ -2.16
SS18-214ENST00000580003 MRAP2Q96G30 205 aa1.57□□□□□ -2.16
SS18-214ENST00000580003 HSPB9Q9BQS6 159 aa1.57□□□□□ -2.16
SS18-214ENST00000580003 ZNF426Q9BUY5 554 aa1.57□□□□□ -2.16
SS18-214ENST00000580003 OR51E2Q9H255 320 aa1.57□□□□□ -2.16
SS18-214ENST00000580003 DMAC2Q9NW81 257 aa1.57□□□□□ -2.16
SS18-214ENST00000580003 MED13Q9UHV7 2174 aa1.57□□□□□ -2.16
SS18-214ENST00000580003 MYO5BQ9ULV0 1848 aa1.56□□□□□ -2.16
SS18-214ENST00000580003 DENND4BO75064 1496 aaPredicted RBP1.56□□□□□ -2.16
SS18-214ENST00000580003 ARHGAP32A7KAX9 2087 aa1.56□□□□□ -2.16
SS18-214ENST00000580003 IGHV3-15A0A0B4J1V0 119 aa1.56□□□□□ -2.16
SS18-214ENST00000580003 RAB19A4D1S5 217 aa1.56□□□□□ -2.16
SS18-214ENST00000580003 UBFD1O14562 309 aaKnown RBP1.56□□□□□ -2.16
SS18-214ENST00000580003 POLR3GO15318 223 aaPredicted RBP1.56□□□□□ -2.16
SS18-214ENST00000580003 CYTH3O43739 400 aa1.56□□□□□ -2.16
SS18-214ENST00000580003 ACTR1BP42025 376 aa1.56□□□□□ -2.16
SS18-214ENST00000580003 UBE2KP61086 200 aa1.56□□□□□ -2.16
SS18-214ENST00000580003 TIMM23BQ5SRD1 257 aa1.56□□□□□ -2.16
SS18-214ENST00000580003 SLC35F6Q8N357 371 aa1.56□□□□□ -2.16
SS18-214ENST00000580003 TMIGD2Q96BF3 282 aa1.56□□□□□ -2.16
SS18-214ENST00000580003 GOLPH3Q9H4A6 298 aa1.56□□□□□ -2.16
SS18-214ENST00000580003 PRO2289Q9P1D8 64 aa1.56□□□□□ -2.16
SS18-214ENST00000580003 ATAD5Q96QE3 1844 aa1.55□□□□□ -2.16
SS18-214ENST00000580003 RCVRNP35243 200 aa1.55□□□□□ -2.16
SS18-214ENST00000580003 MAGEA12P43365 314 aa1.55□□□□□ -2.16
SS18-214ENST00000580003 DYNLL1P63167 89 aaKnown RBP1.55□□□□□ -2.16
SS18-214ENST00000580003 UAP1Q16222 522 aaPredicted RBP1.55□□□□□ -2.16
SS18-214ENST00000580003 GLT6D1Q7Z4J2 308 aa1.55□□□□□ -2.16
SS18-214ENST00000580003 ANGPTL6Q8NI99 470 aa1.55□□□□□ -2.16
SS18-214ENST00000580003 TIMM21Q9BVV7 248 aa1.55□□□□□ -2.16
SS18-214ENST00000580003 ZNF471Q9BX82 626 aaPredicted RBP1.55□□□□□ -2.16
SS18-214ENST00000580003 GTSF1LQ9H1H1 148 aa1.55□□□□□ -2.16
SS18-214ENST00000580003 ABCB11O95342 1321 aa1.55□□□□□ -2.16
SS18-214ENST00000580003 NYNRINQ9P2P1 1898 aaKnown RBP1.54□□□□□ -2.16
SS18-214ENST00000580003 C9J4A7 227 aa1.54□□□□□ -2.16
SS18-214ENST00000580003 ESDP10768 282 aa1.54□□□□□ -2.16
SS18-214ENST00000580003 SULT1A2P50226 295 aa1.54□□□□□ -2.16
SS18-214ENST00000580003 KRTAP10-4P60372 401 aaPredicted RBP1.54□□□□□ -2.16
SS18-214ENST00000580003 COA5Q86WW8 74 aa1.54□□□□□ -2.16
SS18-214ENST00000580003 LHFPL5Q8TAF8 219 aa1.54□□□□□ -2.16
SS18-214ENST00000580003 MED18Q9BUE0 208 aa1.54□□□□□ -2.16
SS18-214ENST00000580003 METTL17Q9H7H0 456 aaPredicted RBP1.54□□□□□ -2.16
SS18-214ENST00000580003 NXT1Q9UKK6 140 aaKnown RBP1.54□□□□□ -2.16
SS18-214ENST00000580003 RBMX2Q9Y388 322 aaKnown RBP1.54□□□□□ -2.16
SS18-214ENST00000580003 RAB3GAP2Q9H2M9 1393 aa1.54□□□□□ -2.16
SS18-214ENST00000580003 A0A1B0GW15 77 aa1.53□□□□□ -2.16
SS18-214ENST00000580003 GRIFINA4D1Z8 144 aa1.53□□□□□ -2.16
SS18-214ENST00000580003 GADD45AP24522 165 aa1.53□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms