RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 RAB11BQ15907 218 aa6.49□□□□□ -1.37
VPS53-214ENST00000572607 ZNF554Q86TJ5 538 aa6.49□□□□□ -1.37
VPS53-214ENST00000572607 OR8H3Q8N146 312 aa6.49□□□□□ -1.37
VPS53-214ENST00000572607 Q8N2B8 174 aa6.49□□□□□ -1.37
VPS53-214ENST00000572607 LINC00311Q8N616 119 aa6.49□□□□□ -1.37
VPS53-214ENST00000572607 C8orf31Q8N9H6 132 aa6.49□□□□□ -1.37
VPS53-214ENST00000572607 UBALD1Q8TB05 177 aa6.49□□□□□ -1.37
VPS53-214ENST00000572607 RBM14Q96PK6 669 aaKnown RBP6.49□□□□□ -1.37
VPS53-214ENST00000572607 CHMP1AQ9HD42 196 aaPredicted RBP6.49□□□□□ -1.37
VPS53-214ENST00000572607 ABRACLQ9P1F3 81 aa6.49□□□□□ -1.37
VPS53-214ENST00000572607 MOB4Q9Y3A3 225 aa6.49□□□□□ -1.37
VPS53-214ENST00000572607 AK6Q9Y3D8 172 aaKnown RBP6.49□□□□□ -1.37
VPS53-214ENST00000572607 LRRC42Q9Y546 428 aa6.49□□□□□ -1.37
VPS53-214ENST00000572607 WNK1Q9H4A3 2382 aa6.49□□□□□ -1.37
VPS53-214ENST00000572607 DNAH3Q8TD57 4116 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 IGHV3-43A0A0B4J1X8 118 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 A0A1W2PPE3 182 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 LY6LH3BQJ8 138 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 C15orf65H3BRN8 121 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 SLC17A2O00624 439 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 TXNL1O43396 289 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 FBXO24O75426 580 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 RGS11O94810 467 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 HBZP02008 142 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 SNRNP70P08621 437 aaKnown RBP6.48□□□□□ -1.37
VPS53-214ENST00000572607 IGHV3-43DP0DP04 118 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 BLCAPP62952 87 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 FABP5Q01469 135 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 ZNF816Q0VGE8 651 aaPredicted RBP6.48□□□□□ -1.37
VPS53-214ENST00000572607 HABP2Q14520 560 aaPredicted RBP6.48□□□□□ -1.37
VPS53-214ENST00000572607 P2RY14Q15391 338 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 C9orf152Q5JTZ5 239 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 OR10K2Q6IF99 312 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 TMEM91Q6ZNR0 172 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 OR2W3Q7Z3T1 314 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 MOB3BQ86TA1 216 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 THNSL2Q86YJ6 484 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 GAPTQ8N292 157 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 DRAM1Q8N682 238 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 C11orf44Q8N8P7 122 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 OR10V1Q8NGI7 309 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 OR56B4Q8NH76 319 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 FAM110DQ8TAY7 271 aaPredicted RBP6.48□□□□□ -1.37
VPS53-214ENST00000572607 SETD6Q8TBK2 473 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 FCGR1BQ92637 280 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 TM2D1Q9BX74 207 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 RIMS4Q9H426 269 aaPredicted RBP6.48□□□□□ -1.37
VPS53-214ENST00000572607 TAF9BQ9HBM6 251 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 PLEKHJ1Q9NW61 149 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 JPT1Q9UK76 154 aa6.48□□□□□ -1.37
VPS53-214ENST00000572607 A0A1W2PPI3 338 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 TMEM14DPA8MWL7 114 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 DENRO43583 198 aaKnown RBP6.47□□□□□ -1.37
VPS53-214ENST00000572607 IGKV1D-33P01593 117 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 IGKV1-33P01594 117 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 RCC1P18754 421 aaPredicted RBP6.47□□□□□ -1.37
VPS53-214ENST00000572607 PSMB9P28065 219 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 CHATP28329 748 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 BLVRBP30043 206 aaPredicted RBP6.47□□□□□ -1.37
VPS53-214ENST00000572607 REG1BP48304 166 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 MRPS15P82914 257 aaKnown RBP6.47□□□□□ -1.37
VPS53-214ENST00000572607 EMX1Q04741 257 aaPredicted RBP6.47□□□□□ -1.37
VPS53-214ENST00000572607 UNC119Q13432 240 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 ABCA11PQ4W5N1 156 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 UTF1Q5T230 341 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 MOB1BQ7L9L4 216 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 C6orf201Q7Z4U5 140 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 CENPVQ7Z7K6 275 aaPredicted RBP6.47□□□□□ -1.37
VPS53-214ENST00000572607 TGIF2LXQ8IUE1 241 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 OR56B1Q8NGI3 324 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 OR1L1Q8NH94 360 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 MRPL30Q8TCC3 161 aaKnown RBP6.47□□□□□ -1.37
VPS53-214ENST00000572607 GALMQ96C23 342 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 SULT4A1Q9BR01 284 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 NICN1Q9BSH3 213 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 FAAP24Q9BTP7 215 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 YTHDF1Q9BYJ9 559 aaKnown RBP6.47□□□□□ -1.37
VPS53-214ENST00000572607 KRTAP4-7Q9BYR0 210 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 OR2S2Q9NQN1 319 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 SERTAD4Q9NUC0 356 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 MBNL3Q9NUK0 354 aaKnown RBP6.47□□□□□ -1.37
VPS53-214ENST00000572607 NDUFB11Q9NX14 153 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 STEAP1Q9UHE8 339 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 MGAT4AQ9UM21 535 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 V9GY05 133 aa6.47□□□□□ -1.37
VPS53-214ENST00000572607 IGHV1-3A0A0C4DH29 117 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 TRDV1A0A1B0GX56 115 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 FAM90A9PA6NNJ1 464 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 FGF16O43320 207 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 TSPAN15O95858 294 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 OPN1MWP04001 364 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 OPN1MW2P0DN77 364 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 OPN1MW3P0DN78 364 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 GALP22466 123 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 LOXL3P58215 753 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 HTD2P86397 168 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 DIAPH2-AS1Q14236 149 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 HNF4GQ14541 408 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 SSX1Q16384 188 aa6.46□□□□□ -1.38
VPS53-214ENST00000572607 NSUN5P1Q3KNT7 163 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms