RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 RBMXL1Q96E39 390 aaKnown RBP11.68□□□□□ -0.54
CLN3-236ENST00000568558 ANKRD60Q9BZ19 345 aa11.68□□□□□ -0.54
CLN3-236ENST00000568558 SPACA1Q9HBV2 294 aa11.68□□□□□ -0.54
CLN3-236ENST00000568558 CHCHD3Q9NX63 227 aaKnown RBP11.68□□□□□ -0.54
CLN3-236ENST00000568558 DYNC2H1Q8NCM8 4307 aaKnown RBP11.68□□□□□ -0.54
CLN3-236ENST00000568558 DNAH7Q8WXX0 4024 aa11.67□□□□□ -0.54
CLN3-236ENST00000568558 TRBV5-5A0A0J9YX44 114 aa11.67□□□□□ -0.54
CLN3-236ENST00000568558 PNMA8CA0A1B0GUJ8 204 aa11.67□□□□□ -0.54
CLN3-236ENST00000568558 MAGEA13PA6NCF6 341 aa11.67□□□□□ -0.54
CLN3-236ENST00000568558 PTGES3LE9PB15 166 aa11.67□□□□□ -0.54
CLN3-236ENST00000568558 GPX5O75715 221 aa11.67□□□□□ -0.54
CLN3-236ENST00000568558 CDK1P06493 297 aa11.67□□□□□ -0.54
CLN3-236ENST00000568558 VDAC1P21796 283 aa11.67□□□□□ -0.54
CLN3-236ENST00000568558 SOX6P35712 828 aa11.67□□□□□ -0.54
CLN3-236ENST00000568558 ZNF134P52741 427 aa11.67□□□□□ -0.54
CLN3-236ENST00000568558 F2RL1P55085 397 aa11.67□□□□□ -0.54
CLN3-236ENST00000568558 FHL3Q13643 280 aa11.67□□□□□ -0.54
CLN3-236ENST00000568558 TMEM30BQ3MIR4 351 aa11.67□□□□□ -0.54
CLN3-236ENST00000568558 SYT6Q5T7P8 510 aaPredicted RBP11.67□□□□□ -0.54
CLN3-236ENST00000568558 GAPTQ8N292 157 aa11.67□□□□□ -0.54
CLN3-236ENST00000568558 C4orf3Q8WVX3 66 aa11.67□□□□□ -0.54
CLN3-236ENST00000568558 GHSRQ92847 366 aa11.67□□□□□ -0.54
CLN3-236ENST00000568558 PGLYRP3Q96LB9 341 aa11.67□□□□□ -0.54
CLN3-236ENST00000568558 PRR25Q96S07 402 aa11.67□□□□□ -0.54
CLN3-236ENST00000568558 RAB9BQ9NP90 201 aa11.67□□□□□ -0.54
CLN3-236ENST00000568558 GNG12Q9UBI6 72 aa11.67□□□□□ -0.54
CLN3-236ENST00000568558 ZNF580Q9UK33 172 aa11.67□□□□□ -0.54
CLN3-236ENST00000568558 TRAPPC2LQ9UL33 140 aa11.67□□□□□ -0.54
CLN3-236ENST00000568558 U3KQK5 164 aa11.67□□□□□ -0.54
CLN3-236ENST00000568558 SEC14L6B5MCN3 397 aa11.66□□□□□ -0.54
CLN3-236ENST00000568558 MCRIP1C9JLW8 97 aa11.66□□□□□ -0.54
CLN3-236ENST00000568558 MYL12BO14950 172 aa11.66□□□□□ -0.54
CLN3-236ENST00000568558 SPINT2O43291 252 aa11.66□□□□□ -0.54
CLN3-236ENST00000568558 IGF1P05019 195 aa11.66□□□□□ -0.54
CLN3-236ENST00000568558 PSMB8P28062 276 aa11.66□□□□□ -0.54
CLN3-236ENST00000568558 RPS11P62280 158 aaKnown RBP eCLIP11.66□□□□□ -0.54
CLN3-236ENST00000568558 MED21Q13503 144 aa11.66□□□□□ -0.54
CLN3-236ENST00000568558 GPR176Q14439 515 aa11.66□□□□□ -0.54
CLN3-236ENST00000568558 CT45A1Q5HYN5 189 aa11.66□□□□□ -0.54
CLN3-236ENST00000568558 NKAPLQ5M9Q1 402 aa11.66□□□□□ -0.54
CLN3-236ENST00000568558 C6orf183Q5T699 404 aa11.66□□□□□ -0.54
CLN3-236ENST00000568558 NANOGP1Q8N7R0 232 aa11.66□□□□□ -0.54
CLN3-236ENST00000568558 OR10V1Q8NGI7 309 aa11.66□□□□□ -0.54
CLN3-236ENST00000568558 OR4K15Q8NH41 348 aa11.66□□□□□ -0.54
CLN3-236ENST00000568558 CT45A3Q8NHU0 189 aa11.66□□□□□ -0.54
CLN3-236ENST00000568558 KCTD7Q96MP8 289 aa11.66□□□□□ -0.54
CLN3-236ENST00000568558 VCX3BQ9H321 246 aa11.66□□□□□ -0.54
CLN3-236ENST00000568558 ETAA1Q9NY74 926 aa11.66□□□□□ -0.54
CLN3-236ENST00000568558 SCOCQ9UIL1 159 aa11.66□□□□□ -0.54
CLN3-236ENST00000568558 STAB2Q8WWQ8 2551 aa11.66□□□□□ -0.54
CLN3-236ENST00000568558 TRAV8-7A0A075B6U6 113 aa11.65□□□□□ -0.54
CLN3-236ENST00000568558 HBZP02008 142 aa11.65□□□□□ -0.54
CLN3-236ENST00000568558 OR5H8P0DN80 308 aa11.65□□□□□ -0.54
CLN3-236ENST00000568558 FSTP19883 344 aa11.65□□□□□ -0.54
CLN3-236ENST00000568558 ECI1P42126 302 aa11.65□□□□□ -0.54
CLN3-236ENST00000568558 WNT4P56705 351 aa11.65□□□□□ -0.54
CLN3-236ENST00000568558 LSAMPQ13449 338 aa11.65□□□□□ -0.54
CLN3-236ENST00000568558 Q499Y3 187 aa11.65□□□□□ -0.54
CLN3-236ENST00000568558 RAB12Q6IQ22 244 aa11.65□□□□□ -0.54
CLN3-236ENST00000568558 TRAT1Q6PIZ9 186 aa11.65□□□□□ -0.54
CLN3-236ENST00000568558 PRR18Q8N4B5 295 aa11.65□□□□□ -0.54
CLN3-236ENST00000568558 OR1L1Q8NH94 360 aa11.65□□□□□ -0.54
CLN3-236ENST00000568558 MYOZ3Q8TDC0 251 aa11.65□□□□□ -0.54
CLN3-236ENST00000568558 MUL1Q969V5 352 aa11.65□□□□□ -0.54
CLN3-236ENST00000568558 MRPS24Q96EL2 167 aaKnown RBP11.65□□□□□ -0.54
CLN3-236ENST00000568558 CKLFQ9UBR5 152 aa11.65□□□□□ -0.54
CLN3-236ENST00000568558 ZNF107Q9UII5 783 aaPredicted RBP11.65□□□□□ -0.54
CLN3-236ENST00000568558 MRPS28Q9Y2Q9 187 aaKnown RBP11.65□□□□□ -0.54
CLN3-236ENST00000568558 SORL1Q92673 2214 aa11.65□□□□□ -0.54
CLN3-236ENST00000568558 LANCL1O43813 399 aa11.64□□□□□ -0.55
CLN3-236ENST00000568558 SC5DO75845 299 aa11.64□□□□□ -0.55
CLN3-236ENST00000568558 SLC2A2P11168 524 aaPredicted RBP11.64□□□□□ -0.55
CLN3-236ENST00000568558 RCC1P18754 421 aaPredicted RBP11.64□□□□□ -0.55
CLN3-236ENST00000568558 IRF3Q14653 427 aa11.64□□□□□ -0.55
CLN3-236ENST00000568558 MMDQ15546 238 aa11.64□□□□□ -0.55
CLN3-236ENST00000568558 YIF1BQ5BJH7 314 aa11.64□□□□□ -0.55
CLN3-236ENST00000568558 STEAP3Q658P3 488 aa11.64□□□□□ -0.55
CLN3-236ENST00000568558 GLIPR1L1Q6UWM5 242 aa11.64□□□□□ -0.55
CLN3-236ENST00000568558 JAGN1Q8N5M9 183 aa11.64□□□□□ -0.55
CLN3-236ENST00000568558 OR11H1Q8NG94 326 aa11.64□□□□□ -0.55
CLN3-236ENST00000568558 CNBD2Q96M20 576 aa11.64□□□□□ -0.55
CLN3-236ENST00000568558 LSM2Q9Y333 95 aaKnown RBP11.64□□□□□ -0.55
CLN3-236ENST00000568558 PEX16Q9Y5Y5 336 aa11.64□□□□□ -0.55
CLN3-236ENST00000568558 TRBV5-7A0A0A0MS05 114 aa11.63□□□□□ -0.55
CLN3-236ENST00000568558 A0A1W2PPK0 400 aa11.63□□□□□ -0.55
CLN3-236ENST00000568558 FAM90A10PA6NDY2 464 aa11.63□□□□□ -0.55
CLN3-236ENST00000568558 FAM90A7PA6NKC0 464 aa11.63□□□□□ -0.55
CLN3-236ENST00000568558 FAM90A23PA8MXZ1 464 aa11.63□□□□□ -0.55
CLN3-236ENST00000568558 CA11O75493 328 aa11.63□□□□□ -0.55
CLN3-236ENST00000568558 CELP19835 753 aa11.63□□□□□ -0.55
CLN3-236ENST00000568558 PPIFP30405 207 aaKnown RBP11.63□□□□□ -0.55
CLN3-236ENST00000568558 HSPA13P48723 471 aa11.63□□□□□ -0.55
CLN3-236ENST00000568558 ZNF260Q3ZCT1 412 aa11.63□□□□□ -0.55
CLN3-236ENST00000568558 RNLSQ5VYX0 342 aa11.63□□□□□ -0.55
CLN3-236ENST00000568558 AWAT2Q6E213 333 aa11.63□□□□□ -0.55
CLN3-236ENST00000568558 CYYR1Q96J86 154 aa11.63□□□□□ -0.55
CLN3-236ENST00000568558 OR14A2Q96R54 314 aa11.63□□□□□ -0.55
CLN3-236ENST00000568558 CHCHD6Q9BRQ6 235 aa11.63□□□□□ -0.55
CLN3-236ENST00000568558 SELENOIQ9C0D9 397 aa11.63□□□□□ -0.55
CLN3-236ENST00000568558 DUSP21Q9H596 190 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms