RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 CRADDP78560 199 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 PAFAH1B3Q15102 231 aaKnown RBP4.23□□□□□ -1.73
VPS35-205ENST00000563984 PDGFRLQ15198 375 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 UBE2SQ16763 222 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 TMEM183BQ1AE95 376 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 CLEC12BQ2HXU8 276 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 KRTAP27-1Q3LI81 207 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 FAM106AQ4KMX7 169 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 TP53I3Q53FA7 332 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 LRRC10Q5BKY1 277 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 DMKNQ6E0U4 476 aaPredicted RBP4.23□□□□□ -1.73
VPS35-205ENST00000563984 OR10K2Q6IF99 312 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 FBXL22Q6P050 247 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 SFXN4Q6P4A7 337 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 IL34Q6ZMJ4 242 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 ANKRD37Q7Z713 158 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 LRRTM1Q86UE6 522 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 CDC20BQ86Y33 519 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 TMEM183AQ8IXX5 376 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 WDR31Q8NA23 367 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.23□□□□□ -1.73
VPS35-205ENST00000563984 LINC00301Q8NCQ3 95 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 OR10G7Q8NGN6 311 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 OR1B1Q8NGR6 318 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 OR2A12Q8NGT7 310 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 LMO3Q8TAP4 145 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 THEM6Q8WUY1 208 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 ZNRF4Q8WWF5 429 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 BADQ92934 168 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 DDIT4LQ96D03 193 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 PHYHIPLQ96FC7 376 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 PCED1BQ96HM7 432 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 TMEM101Q96IK0 257 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 HIST1H2BLQ99880 126 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 TMEM70Q9BUB7 260 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 PRRG4Q9BZD6 226 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 ATG5Q9H1Y0 275 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 BANF2Q9H503 90 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 PHPT1Q9NRX4 125 aaPredicted RBP4.23□□□□□ -1.73
VPS35-205ENST00000563984 FZR1Q9UM11 496 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 VDAC3Q9Y277 283 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 MRPS16Q9Y3D3 137 aaKnown RBP4.23□□□□□ -1.73
VPS35-205ENST00000563984 SOX21Q9Y651 276 aaPredicted RBP4.23□□□□□ -1.73
VPS35-205ENST00000563984 ALKQ9UM73 1620 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 ZNF638Q14966 1978 aaKnown RBP4.23□□□□□ -1.73
VPS35-205ENST00000563984 COL1A2P08123 1366 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 SUPT6HQ7KZ85 1726 aaKnown RBP4.23□□□□□ -1.73
VPS35-205ENST00000563984 ABCA3Q99758 1704 aa4.23□□□□□ -1.73
VPS35-205ENST00000563984 ANKARQ7Z5J8 1434 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 ABCA6Q8N139 1617 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 TRAV24A0A0B4J272 114 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 C7orf66A4D0T2 115 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 C9JAW5 83 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 H7BYZ3 331 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 FGF17O60258 216 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 PRKNO60260 465 aaPredicted RBP4.22□□□□□ -1.73
VPS35-205ENST00000563984 HBE1P02100 147 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 PFN1P07737 140 aaKnown RBP4.22□□□□□ -1.73
VPS35-205ENST00000563984 CD14P08571 375 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 CD99P14209 185 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 IGFBP3P17936 291 aaPredicted RBP4.22□□□□□ -1.73
VPS35-205ENST00000563984 NTF3P20783 257 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 SNCAP37840 140 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 APOBEC1P41238 236 aaKnown RBP4.22□□□□□ -1.73
VPS35-205ENST00000563984 POLR2HP52434 150 aaKnown RBP4.22□□□□□ -1.73
VPS35-205ENST00000563984 DLX1P56177 255 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 HILS1P60008 231 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 PFN3P60673 137 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 GRB2P62993 217 aaKnown RBP4.22□□□□□ -1.73
VPS35-205ENST00000563984 MRPS6P82932 125 aaKnown RBP4.22□□□□□ -1.73
VPS35-205ENST00000563984 RPL36AP83881 106 aaKnown RBP4.22□□□□□ -1.73
VPS35-205ENST00000563984 UBE2V2Q15819 145 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 SPATA31B1PQ5VZV4 182 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 TMEM236Q5W0B7 351 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 HIST2H2BCQ6DN03 193 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 HIST2H2BDQ6DRA6 164 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 XAF1Q6GPH4 301 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 TMEM184AQ6ZMB5 413 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 GOLT1AQ6ZVE7 132 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 TMEM219Q86XT9 240 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 FTMTQ8N4E7 242 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 SUMF2Q8NBJ7 301 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 OR11G2Q8NGC1 345 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 SECTM1Q8WVN6 248 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 RXFP2Q8WXD0 754 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 RTP4Q96DX8 246 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 DERL3Q96Q80 235 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 ZNF300Q96RE9 604 aaPredicted RBP4.22□□□□□ -1.73
VPS35-205ENST00000563984 PSMB7Q99436 277 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 NIPSNAP3BQ9BS92 247 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 VAMP8Q9BV40 100 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 OR2H1Q9GZK4 316 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 OR51E2Q9H255 320 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 RERGLQ9H628 205 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 HRASLS2Q9NWW9 162 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 MARCH5Q9NX47 278 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 KCNIP1Q9NZI2 227 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 DNAJC27Q9NZQ0 273 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 COMMD9Q9P000 198 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 UQCR10Q9UDW1 63 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms