RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 TMEM200BQ69YZ2 307 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 SLC35E4Q6ICL7 350 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 ZNF880Q6PDB4 577 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 C16orf87Q6PH81 154 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 SLC36A1Q7Z2H8 476 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 HOGA1Q86XE5 327 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 PDZD9Q8IXQ8 264 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 SPICQ8N5J4 248 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 GDPD1Q8N9F7 314 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 BEST4Q8NFU0 473 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 OR4C16Q8NGL9 310 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 FCAMRQ8WWV6 532 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 IL1F10Q8WWZ1 152 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 MED30Q96HR3 178 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 AJUBAQ96IF1 538 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 SSBP3Q9BWW4 388 aaPredicted RBP4.28□□□□□ -1.72
SPG11-220ENST00000559933 C11orf54Q9H0W9 315 aaPredicted RBP4.28□□□□□ -1.72
SPG11-220ENST00000559933 TAF9BQ9HBM6 251 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 SPACA1Q9HBV2 294 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 Q9N2K0 584 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 SIRT7Q9NRC8 400 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 CALYQ9NYX4 217 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 ONECUT1Q9UBC0 465 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 KAAG1Q9UBP8 84 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 CLN8Q9UBY8 286 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 MTFP1Q9UDX5 166 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 RBMX2Q9Y388 322 aaKnown RBP4.28□□□□□ -1.72
SPG11-220ENST00000559933 MALRD1Q5VYJ5 2156 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 NOTCH2Q04721 2471 aa4.28□□□□□ -1.72
SPG11-220ENST00000559933 LOC105371242A0A075B767 164 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 IGHV3OR16-10A0A075B7F0 116 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 PPIAL4CA0A0B4J2A2 164 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 IGKV1D-13A0A0B4J2D9 117 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 ANKRD20A5PA0PJZ0 165 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 TRDCB7Z8K6 153 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 C15orf65H3BRN8 121 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 H7C1Q1 480 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 FABP7O15540 132 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 HBZP02008 142 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 ZNF735P0CB33 412 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 PPIAL4GP0DN37 164 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 CGB3P0DN86 165 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 CGB7P0DN87 165 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 IGHV4-31P0DP07 118 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 IGKV1-13P0DP09 117 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 USF1P22415 310 aaPredicted RBP4.27□□□□□ -1.73
SPG11-220ENST00000559933 NFYAP23511 347 aaPredicted RBP4.27□□□□□ -1.73
SPG11-220ENST00000559933 DTYMKP23919 212 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 COX7A1P24310 79 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 NFYBP25208 207 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 PAX6P26367 422 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 INPP1P49441 399 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 GNG10P50151 68 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 CCR6P51684 374 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 DLX6P56179 175 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 ARPC4P59998 168 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 BAMBIQ13145 260 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 RBM39Q14498 530 aaKnown RBP4.27□□□□□ -1.73
SPG11-220ENST00000559933 ICAM4Q14773 271 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 KCNJ8Q15842 424 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 SCGB2B2Q4G0G5 96 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 ESCO2Q56NI9 601 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 SHEQ5VZ18 495 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 LRRC75A-AS1Q8N1F1 130 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 GAPTQ8N292 157 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 PNKDQ8N490 385 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 TOMM5Q8N4H5 51 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 Q8N7P7 452 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 NINJ1Q92982 152 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 BORCS5Q969J3 196 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 ARL11Q969Q4 196 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 MRGPRFQ96AM1 343 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 C5orf30Q96GV9 206 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 GPHA2Q96T91 129 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 SLC6A7Q99884 636 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 CCDC32Q9BV29 185 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 SUCNR1Q9BXA5 334 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 REG4Q9BYZ8 158 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 FXYD6Q9H0Q3 95 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 SCPEP1Q9HB40 452 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 ZNF286AQ9HBT8 521 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 HRASLSQ9HDD0 168 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 MCUBQ9NWR8 336 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 EHFQ9NZC4 300 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 MIOXQ9UGB7 285 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 SLC23A1Q9UHI7 598 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 ANXA10Q9UJ72 324 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 RPUSD1Q9UJJ7 312 aaKnown RBP4.27□□□□□ -1.73
SPG11-220ENST00000559933 FLVCR2Q9UPI3 526 aa4.27□□□□□ -1.73
SPG11-220ENST00000559933 FLNAP21333 2647 aaKnown RBP4.27□□□□□ -1.73
SPG11-220ENST00000559933 ANK3Q12955 4377 aaKnown RBP4.27□□□□□ -1.73
SPG11-220ENST00000559933 DNHD1Q96M86 4753 aa4.26□□□□□ -1.73
SPG11-220ENST00000559933 YLPM1P49750 1951 aaKnown RBP4.26□□□□□ -1.73
SPG11-220ENST00000559933 TRGV10A0A0A0MS01 117 aa4.26□□□□□ -1.73
SPG11-220ENST00000559933 TRBV6-6A0A0A6YYG2 114 aa4.26□□□□□ -1.73
SPG11-220ENST00000559933 IGHV2-70DA0A0C4DH43 119 aa4.26□□□□□ -1.73
SPG11-220ENST00000559933 OR5H14A6NHG9 310 aa4.26□□□□□ -1.73
SPG11-220ENST00000559933 ZNF736B4DX44 427 aaPredicted RBP4.26□□□□□ -1.73
SPG11-220ENST00000559933 NDUFS8O00217 210 aa4.26□□□□□ -1.73
SPG11-220ENST00000559933 SULT1C2O00338 296 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms