RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-222	ENST00000555774	SMPD2	O60906	423 aa		11.43	□□□□□ -0.58
SHMT2-222	ENST00000555774	NXPH3	O95157	252 aa		11.43	□□□□□ -0.58
SHMT2-222	ENST00000555774	IGKV1-39	P01597	117 aa		11.43	□□□□□ -0.58
SHMT2-222	ENST00000555774	IGKV1D-39	P04432	117 aa		11.43	□□□□□ -0.58
SHMT2-222	ENST00000555774	PGA5	P0DJD9	388 aa		11.43	□□□□□ -0.58
SHMT2-222	ENST00000555774	SELE	P16581	610 aa		11.43	□□□□□ -0.58
SHMT2-222	ENST00000555774	UBE2K	P61086	200 aa		11.43	□□□□□ -0.58
SHMT2-222	ENST00000555774	HBG1	P69891	147 aa		11.43	□□□□□ -0.58
SHMT2-222	ENST00000555774	HBG2	P69892	147 aa		11.43	□□□□□ -0.58
SHMT2-222	ENST00000555774	ZNF429	Q86V71	674 aa		11.43	□□□□□ -0.58
SHMT2-222	ENST00000555774	THNSL2	Q86YJ6	484 aa		11.43	□□□□□ -0.58
SHMT2-222	ENST00000555774	SCCPDH	Q8NBX0	429 aa		11.43	□□□□□ -0.58
SHMT2-222	ENST00000555774	ZBTB34	Q8NCN2	500 aa		11.43	□□□□□ -0.58
SHMT2-222	ENST00000555774	RAB39B	Q96DA2	213 aa		11.43	□□□□□ -0.58
SHMT2-222	ENST00000555774	LOXL4	Q96JB6	756 aa		11.43	□□□□□ -0.58
SHMT2-222	ENST00000555774	DOCK10	Q96BY6	2186 aa		11.43	□□□□□ -0.58
SHMT2-222	ENST00000555774	TRGV5	A0A0B4J1U4	118 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	LNP1	A1A4G5	178 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	TMEM210	A6NLX4	147 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	SH2D1B	O14796	132 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	B2M	P61769	119 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	TMEM267	Q0VDI3	215 aa	Predicted RBP	11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	TGIF1	Q15583	401 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	ADAM5	Q6NVV9	412 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	FIP1L1	Q6UN15	594 aa	Known RBP	11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	WDR86	Q86TI4	376 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	MBD3L1	Q8WWY6	194 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	GMPPA	Q96IJ6	420 aa	Predicted RBP	11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	NIPSNAP3B	Q9BS92	247 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	PSENEN	Q9NZ42	101 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	ARID1A	O14497	2285 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774		B4DEV8	164 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	AP4M1	O00189	453 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	SIRPB1	O00241	398 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	IGKV1-5	P01602	117 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	CD59	P13987	128 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	RAC2	P15153	192 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	TAGLN2	P37802	199 aa	Known RBP	11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	PPP1CB	P62140	327 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	SERF2	P84101	59 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	FABP9	Q0Z7S8	132 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774		Q6ZRM9	215 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	ZNF525	Q8N782	197 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	TCTEX1D2	Q8WW35	142 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	OR51B6	Q9H340	312 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	CDH20	Q9HBT6	801 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	TMEM9B	Q9NQ34	198 aa		11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774	CISD1	Q9NZ45	108 aa	Known RBP	11.42	□□□□□ -0.58
SHMT2-222	ENST00000555774		A0A1W2PR80	420 aa		11.41	□□□□□ -0.58
SHMT2-222	ENST00000555774	ARGFX	A6NJG6	315 aa		11.41	□□□□□ -0.58
SHMT2-222	ENST00000555774	IQCF6	A8MYZ5	107 aa		11.41	□□□□□ -0.58
SHMT2-222	ENST00000555774	PPIH	O43447	177 aa	Known RBP	11.41	□□□□□ -0.58
SHMT2-222	ENST00000555774	TGFBR3	Q03167	851 aa		11.41	□□□□□ -0.58
SHMT2-222	ENST00000555774	MSMO1	Q15800	293 aa		11.41	□□□□□ -0.58
SHMT2-222	ENST00000555774	ZNF585B	Q52M93	769 aa		11.41	□□□□□ -0.58
SHMT2-222	ENST00000555774	SPATA46	Q5T0L3	261 aa		11.41	□□□□□ -0.58
SHMT2-222	ENST00000555774	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	11.41	□□□□□ -0.58
SHMT2-222	ENST00000555774	CYB561D1	Q8N8Q1	229 aa		11.41	□□□□□ -0.58
SHMT2-222	ENST00000555774	IL17B	Q9UHF5	180 aa		11.41	□□□□□ -0.58
SHMT2-222	ENST00000555774	KCNS2	Q9ULS6	477 aa		11.41	□□□□□ -0.58
SHMT2-222	ENST00000555774	RBM7	Q9Y580	266 aa	Known RBP	11.41	□□□□□ -0.58
SHMT2-222	ENST00000555774		A0A1W2PPE3	182 aa		11.41	□□□□□ -0.58
SHMT2-222	ENST00000555774	DLK1	P80370	383 aa		11.41	□□□□□ -0.58
SHMT2-222	ENST00000555774	LRRC75B	Q2VPJ9	315 aa		11.41	□□□□□ -0.58
SHMT2-222	ENST00000555774	PINX1	Q96BK5	328 aa	Known RBP	11.41	□□□□□ -0.58
SHMT2-222	ENST00000555774	ZNF251	Q9BRH9	671 aa		11.41	□□□□□ -0.58
SHMT2-222	ENST00000555774	SPRR3	Q9UBC9	169 aa		11.41	□□□□□ -0.58
SHMT2-222	ENST00000555774	PPP1R3C	Q9UQK1	317 aa		11.41	□□□□□ -0.58
SHMT2-222	ENST00000555774		H3BP45	60 aa		11.4	□□□□□ -0.58
SHMT2-222	ENST00000555774	NXPH2	O95156	264 aa		11.4	□□□□□ -0.58
SHMT2-222	ENST00000555774	UBE2N	P61088	152 aa	Known RBP	11.4	□□□□□ -0.58
SHMT2-222	ENST00000555774	PNRC1	Q12796	327 aa	Predicted RBP	11.4	□□□□□ -0.58
SHMT2-222	ENST00000555774	TMEM178A	Q8NBL3	297 aa		11.4	□□□□□ -0.58
SHMT2-222	ENST00000555774	P2RX4	Q99571	388 aa		11.4	□□□□□ -0.58
SHMT2-222	ENST00000555774	DEFB127	Q9H1M4	99 aa		11.4	□□□□□ -0.58
SHMT2-222	ENST00000555774	ZDHHC11	Q9H8X9	412 aa		11.4	□□□□□ -0.58
SHMT2-222	ENST00000555774	MMP24	Q9Y5R2	645 aa		11.4	□□□□□ -0.58
SHMT2-222	ENST00000555774		H0YL77	283 aa		11.4	□□□□□ -0.59
SHMT2-222	ENST00000555774	BCL2	P10415	239 aa		11.4	□□□□□ -0.59
SHMT2-222	ENST00000555774	CEACAM6	P40199	344 aa		11.4	□□□□□ -0.59
SHMT2-222	ENST00000555774	PMS2P11	Q13670	270 aa		11.4	□□□□□ -0.59
SHMT2-222	ENST00000555774	PLA2G2C	Q5R387	149 aa		11.4	□□□□□ -0.59
SHMT2-222	ENST00000555774	P4HA3	Q7Z4N8	544 aa		11.4	□□□□□ -0.59
SHMT2-222	ENST00000555774	DRAM1	Q8N682	238 aa		11.4	□□□□□ -0.59
SHMT2-222	ENST00000555774	TOLLIP	Q9H0E2	274 aa		11.4	□□□□□ -0.59
SHMT2-222	ENST00000555774	HES4	Q9HCC6	221 aa		11.4	□□□□□ -0.59
SHMT2-222	ENST00000555774	KCNIP1	Q9NZI2	227 aa		11.4	□□□□□ -0.59
SHMT2-222	ENST00000555774	TIMM9	Q9Y5J7	89 aa		11.4	□□□□□ -0.59
SHMT2-222	ENST00000555774	TMEM30CP	A0ZSE6	113 aa		11.39	□□□□□ -0.59
SHMT2-222	ENST00000555774	SP9	P0CG40	484 aa		11.39	□□□□□ -0.59
SHMT2-222	ENST00000555774	IAPP	P10997	89 aa		11.39	□□□□□ -0.59
SHMT2-222	ENST00000555774	GLIPR1	P48060	266 aa		11.39	□□□□□ -0.59
SHMT2-222	ENST00000555774	ZNF766	Q5HY98	468 aa		11.39	□□□□□ -0.59
SHMT2-222	ENST00000555774	ZNF787	Q6DD87	383 aa		11.39	□□□□□ -0.59
SHMT2-222	ENST00000555774	INO80C	Q6PI98	192 aa	Predicted RBP	11.39	□□□□□ -0.59
SHMT2-222	ENST00000555774	LILRB2	Q8N423	598 aa		11.39	□□□□□ -0.59
SHMT2-222	ENST00000555774	ZNF645	Q8N7E2	425 aa		11.39	□□□□□ -0.59
SHMT2-222	ENST00000555774	OR2J1	Q9GZK6	312 aa		11.39	□□□□□ -0.59
SHMT2-222	ENST00000555774	RPRM	Q9NS64	109 aa		11.39	□□□□□ -0.59
SHMT2-222	ENST00000555774	TRIOBP	Q9H2D6	2365 aa		11.39	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms