RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 ANXA3P12429 323 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 FPR2P25090 351 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 SEC61A1P61619 476 aaKnown RBP5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 KCNJ8Q15842 424 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 MICBQ29980 383 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 PRAMEF6Q5VXH4 476 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 SIGIRRQ6IA17 410 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 LIN54Q6MZP7 749 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 FAAP20Q6NZ36 180 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 WDR82Q6UXN9 313 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 ACP7Q6ZNF0 438 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 Q6ZR03 302 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 OVCH2Q7RTZ1 564 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 TMED4Q7Z7H5 227 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 WDR86Q86TI4 376 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 LRP11Q86VZ4 500 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 CCDC71LQ8N9Z2 235 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 ITLN1Q8WWA0 313 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 RDH5Q92781 318 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 TAF15Q92804 592 aaKnown RBP eCLIP5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 NEURL2Q9BR09 285 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 RAB1BQ9H0U4 201 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 HES4Q9HCC6 221 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 UFSP2Q9NUQ7 469 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 RNF7Q9UBF6 113 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 ZNF69Q9UC07 566 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 OR14J1Q9UGF5 321 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 SLC23A1Q9UHI7 598 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 TRAPPC2LQ9UL33 140 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 KCNIP3Q9Y2W7 256 aa5.91□□□□□ -1.46
DEPDC4-208ENST00000549341 TENM3Q9P273 2699 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 FAM172BPA6NC97 362 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 NKX6-3A6NJ46 265 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 ZSCAN5BA6NJL1 495 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 SRRM5B3KS81 715 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 SIRPB1O00241 398 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 HSPB6O14558 160 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 FABP7O15540 132 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 OR2H2O95918 312 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 IGHV1-46P01743 117 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 ZNF735P0CB33 412 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 GSTT2P0CG29 244 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 OR5H8P0DN80 308 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 ANXA7P20073 488 aaKnown RBP5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 LMO1P25800 156 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 DUSP1P28562 367 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 EIF2B2P49770 351 aaKnown RBP5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 PPOXP50336 477 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 GMFBP60983 142 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 EFNB3Q15768 340 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 ADIPOQQ15848 244 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 ZFP69Q49AA0 526 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 ABCA11PQ4W5N1 156 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 C6orf183Q5T699 404 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 ZNF626Q68DY1 528 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 SLC35E4Q6ICL7 350 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 Q6P435 159 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 SLC25A42Q86VD7 318 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 MOGAT3Q86VF5 341 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 BATF2Q8N1L9 274 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 ZCCHC24Q8N2G6 241 aaKnown RBP5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 ZNF565Q8N9K5 539 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 OR4D10Q8NGI6 311 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 OR5D13Q8NGL4 314 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 OR4A4PQ8NGN8 299 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 COQ8AQ8NI60 647 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 ZNF431Q8TF32 576 aaPredicted RBP5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 SNX22Q96L94 193 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 ZNF488Q96MN9 340 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 PHB2Q99623 299 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 GHITMQ9H3K2 345 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 RANBP3Q9H6Z4 567 aaPredicted RBP5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 SAP30LQ9HAJ7 183 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 TMEM165Q9HC07 324 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 Q9N2K0 584 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 ZNF230Q9UIE0 474 aaPredicted RBP5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 ZNF222Q9UK12 451 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 FLVCR2Q9UPI3 526 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 PPP1R3CQ9UQK1 317 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 WIPI2Q9Y4P8 454 aa5.9□□□□□ -1.46
DEPDC4-208ENST00000549341 TRAV38-1A0A0B4J264 116 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 TRAV24A0A0B4J272 114 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 OOEPA6NGQ2 149 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 RFPL4AA6NLU0 287 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 RFPL4AL1F8VTS6 287 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 F8VVB4 439 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 F8VWA3 439 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 SLC33A1O00400 549 aaPredicted RBP5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 HSPA12AO43301 675 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 NAPSAO96009 420 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 OR4E1P0C645 316 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 ZNF728P0DKX0 622 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 HKR1P10072 659 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 MUC1P15941 1255 aaPredicted RBP5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 C4BPBP20851 252 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 CD34P28906 385 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 PRDX2P32119 198 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 RBMXP38159 391 aaKnown RBP5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 GABRA2P47869 451 aa5.89□□□□□ -1.47
DEPDC4-208ENST00000549341 UCP3P55916 312 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms