RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 TAF9Q16594 264 aa7.05□□□□□ -1.28
VPS29-203ENST00000546588 TEX36Q5VZQ5 186 aa7.05□□□□□ -1.28
VPS29-203ENST00000546588 ACP7Q6ZNF0 438 aa7.05□□□□□ -1.28
VPS29-203ENST00000546588 Q6ZPA2 131 aa7.05□□□□□ -1.28
VPS29-203ENST00000546588 RTN4RL2Q86UN3 420 aa7.05□□□□□ -1.28
VPS29-203ENST00000546588 ARRDC1Q8N5I2 433 aa7.05□□□□□ -1.28
VPS29-203ENST00000546588 GCSAMQ8N6F7 178 aa7.05□□□□□ -1.28
VPS29-203ENST00000546588 OR4C16Q8NGL9 310 aa7.05□□□□□ -1.28
VPS29-203ENST00000546588 LINC01560Q8TB33 94 aa7.05□□□□□ -1.28
VPS29-203ENST00000546588 IGFBPL1Q8WX77 278 aa7.05□□□□□ -1.28
VPS29-203ENST00000546588 UPRTQ96BW1 309 aa7.05□□□□□ -1.28
VPS29-203ENST00000546588 OR2V2Q96R30 315 aa7.05□□□□□ -1.28
VPS29-203ENST00000546588 PRDM13Q9H4Q3 707 aa7.05□□□□□ -1.28
VPS29-203ENST00000546588 HRASLSQ9HDD0 168 aa7.05□□□□□ -1.28
VPS29-203ENST00000546588 MYOZ1Q9NP98 299 aaPredicted RBP7.05□□□□□ -1.28
VPS29-203ENST00000546588 TAAR3PQ9P1P4 343 aa7.05□□□□□ -1.28
VPS29-203ENST00000546588 PEF1Q9UBV8 284 aaKnown RBP7.05□□□□□ -1.28
VPS29-203ENST00000546588 ZNF222Q9UK12 451 aa7.05□□□□□ -1.28
VPS29-203ENST00000546588 ELF5Q9UKW6 265 aaPredicted RBP7.05□□□□□ -1.28
VPS29-203ENST00000546588 NPTNQ9Y639 398 aa7.05□□□□□ -1.28
VPS29-203ENST00000546588 ANKHD1Q8IWZ3 2542 aaKnown RBP7.05□□□□□ -1.28
VPS29-203ENST00000546588 TPRP12270 2363 aaKnown RBP7.05□□□□□ -1.28
VPS29-203ENST00000546588 RP1L1Q8IWN7 2480 aaPredicted RBP7.05□□□□□ -1.28
VPS29-203ENST00000546588 CACNA1DQ01668 2161 aa7.05□□□□□ -1.28
VPS29-203ENST00000546588 TRAV24A0A0B4J272 114 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 NPIPB11E5RHQ5 1161 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 M0R233 179 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 FCGR3AP08637 254 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 DANCRP0C864 163 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 SMIM6P0DI80 62 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 TNFRSF1AP19438 455 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 GABRR1P24046 479 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 BTG1P62324 171 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 MRPS11P82912 194 aaKnown RBP7.04□□□□□ -1.28
VPS29-203ENST00000546588 MPPED2Q15777 294 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 SMIM21Q3B7S5 101 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 C6orf201Q7Z4U5 140 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 LHFPL1Q86WI0 220 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 FAM185AQ8N0U4 392 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 COMMD1Q8N668 190 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 OR2Z1Q8NG97 314 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 NANPQ8TBE9 248 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 NUDCD2Q8WVJ2 157 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 MAFIPQ8WZ33 124 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 SULT4A1Q9BR01 284 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 DNTTIP1Q9H147 329 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 DPAGT1Q9H3H5 408 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 FN3KRPQ9HA64 309 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 PLEKHJ1Q9NW61 149 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 ZNF581Q9P0T4 197 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 MGAT4CQ9UBM8 478 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 AK3Q9UIJ7 227 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 FZR1Q9UM11 496 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 NUBP2Q9Y5Y2 271 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 CACNA1BQ00975 2339 aa7.04□□□□□ -1.28
VPS29-203ENST00000546588 C7orf66A4D0T2 115 aa7.03□□□□□ -1.28
VPS29-203ENST00000546588 SLC33A1O00400 549 aaPredicted RBP7.03□□□□□ -1.28
VPS29-203ENST00000546588 ZNF737O75373 536 aa7.03□□□□□ -1.28
VPS29-203ENST00000546588 OR7C1O76099 320 aaPredicted RBP7.03□□□□□ -1.28
VPS29-203ENST00000546588 NDUFB6O95139 128 aa7.03□□□□□ -1.28
VPS29-203ENST00000546588 CD3DP04234 171 aa7.03□□□□□ -1.28
VPS29-203ENST00000546588 MUC1P15941 1255 aaPredicted RBP7.03□□□□□ -1.28
VPS29-203ENST00000546588 SRSF1Q07955 248 aaKnown RBP eCLIP7.03□□□□□ -1.28
VPS29-203ENST00000546588 SCGB2A2Q13296 93 aa7.03□□□□□ -1.28
VPS29-203ENST00000546588 RBM39Q14498 530 aaKnown RBP7.03□□□□□ -1.28
VPS29-203ENST00000546588 CDK10Q15131 360 aa7.03□□□□□ -1.28
VPS29-203ENST00000546588 RBMS2Q15434 407 aaKnown RBP7.03□□□□□ -1.28
VPS29-203ENST00000546588 CHRFAM7AQ494W8 412 aa7.03□□□□□ -1.28
VPS29-203ENST00000546588 PRAMEF6Q5VXH4 476 aa7.03□□□□□ -1.28
VPS29-203ENST00000546588 ZNF57Q68EA5 555 aaPredicted RBP7.03□□□□□ -1.28
VPS29-203ENST00000546588 ZNF660Q6AZW8 331 aaPredicted RBP7.03□□□□□ -1.28
VPS29-203ENST00000546588 STEAP1BQ6NZ63 245 aa7.03□□□□□ -1.28
VPS29-203ENST00000546588 MOB1BQ7L9L4 216 aa7.03□□□□□ -1.28
VPS29-203ENST00000546588 TRAPPC6BQ86SZ2 158 aa7.03□□□□□ -1.28
VPS29-203ENST00000546588 PEG10Q86TG7 708 aaKnown RBP7.03□□□□□ -1.28
VPS29-203ENST00000546588 OR5AP2Q8NGF4 316 aa7.03□□□□□ -1.28
VPS29-203ENST00000546588 ITLN1Q8WWA0 313 aa7.03□□□□□ -1.28
VPS29-203ENST00000546588 GLMPQ8WWB7 406 aa7.03□□□□□ -1.28
VPS29-203ENST00000546588 NEDD4LQ96PU5 975 aa7.03□□□□□ -1.28
VPS29-203ENST00000546588 TOLLIPQ9H0E2 274 aa7.03□□□□□ -1.28
VPS29-203ENST00000546588 ELL3Q9HB65 397 aaPredicted RBP7.03□□□□□ -1.28
VPS29-203ENST00000546588 CISD1Q9NZ45 108 aaKnown RBP7.03□□□□□ -1.28
VPS29-203ENST00000546588 IL36RNQ9UBH0 155 aa7.03□□□□□ -1.28
VPS29-203ENST00000546588 MGAT4AQ9UM21 535 aa7.03□□□□□ -1.28
VPS29-203ENST00000546588 WIPI2Q9Y4P8 454 aa7.03□□□□□ -1.28
VPS29-203ENST00000546588 FAM240BA0A1B0GVZ2 78 aa7.02□□□□□ -1.29
VPS29-203ENST00000546588 ZNF736B4DX44 427 aaPredicted RBP7.02□□□□□ -1.29
VPS29-203ENST00000546588 C19orf84I3L1E1 186 aa7.02□□□□□ -1.29
VPS29-203ENST00000546588 HS3ST1O14792 307 aa7.02□□□□□ -1.29
VPS29-203ENST00000546588 SH2D1BO14796 132 aa7.02□□□□□ -1.29
VPS29-203ENST00000546588 TNFRSF13BO14836 293 aaPredicted RBP7.02□□□□□ -1.29
VPS29-203ENST00000546588 OR2H2O95918 312 aa7.02□□□□□ -1.29
VPS29-203ENST00000546588 HAND1O96004 215 aa7.02□□□□□ -1.29
VPS29-203ENST00000546588 PLAUP00749 431 aa7.02□□□□□ -1.29
VPS29-203ENST00000546588 TCRBP04435 133 aa7.02□□□□□ -1.29
VPS29-203ENST00000546588 LINC00614P0C842 121 aa7.02□□□□□ -1.29
VPS29-203ENST00000546588 TRAPPC2P0DI81 140 aa7.02□□□□□ -1.29
VPS29-203ENST00000546588 TRAPPC2BP0DI82 140 aa7.02□□□□□ -1.29
VPS29-203ENST00000546588 SPNP16150 400 aa7.02□□□□□ -1.29
VPS29-203ENST00000546588 INPP1P49441 399 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms