RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 RAMP3O60896 148 aa11.58□□□□□ -0.56
VPS28-215ENST00000531924 GLAP06280 429 aa11.58□□□□□ -0.56
VPS28-215ENST00000531924 ELANEP08246 267 aa11.58□□□□□ -0.56
VPS28-215ENST00000531924 OR5H8P0DN80 308 aa11.58□□□□□ -0.56
VPS28-215ENST00000531924 RCC1P18754 421 aaPredicted RBP11.58□□□□□ -0.56
VPS28-215ENST00000531924 CELP19835 753 aa11.58□□□□□ -0.56
VPS28-215ENST00000531924 MAPK3P27361 379 aaPredicted RBP11.58□□□□□ -0.56
VPS28-215ENST00000531924 RPS11P62280 158 aaKnown RBP eCLIP11.58□□□□□ -0.56
VPS28-215ENST00000531924 DOC2BQ14184 412 aa11.58□□□□□ -0.56
VPS28-215ENST00000531924 CT45A1Q5HYN5 189 aa11.58□□□□□ -0.56
VPS28-215ENST00000531924 STEAP3Q658P3 488 aa11.58□□□□□ -0.56
VPS28-215ENST00000531924 C11orf87Q6NUJ2 197 aa11.58□□□□□ -0.56
VPS28-215ENST00000531924 TMEM65Q6PI78 240 aa11.58□□□□□ -0.56
VPS28-215ENST00000531924 PACRGLQ8N7B6 248 aa11.58□□□□□ -0.56
VPS28-215ENST00000531924 NKAIN3Q8N8D7 197 aa11.58□□□□□ -0.56
VPS28-215ENST00000531924 CT45A3Q8NHU0 189 aa11.58□□□□□ -0.56
VPS28-215ENST00000531924 GGHQ92820 318 aa11.58□□□□□ -0.56
VPS28-215ENST00000531924 PGLYRP3Q96LB9 341 aa11.58□□□□□ -0.56
VPS28-215ENST00000531924 B9D2Q9BPU9 175 aa11.58□□□□□ -0.56
VPS28-215ENST00000531924 CST11Q9H112 138 aa11.58□□□□□ -0.56
VPS28-215ENST00000531924 TAF9BQ9HBM6 251 aa11.58□□□□□ -0.56
VPS28-215ENST00000531924 PLSCR3Q9NRY6 295 aa11.58□□□□□ -0.56
VPS28-215ENST00000531924 ZNF107Q9UII5 783 aaPredicted RBP11.58□□□□□ -0.56
VPS28-215ENST00000531924 H0YHG0 523 aa11.57□□□□□ -0.56
VPS28-215ENST00000531924 RGS11O94810 467 aa11.57□□□□□ -0.56
VPS28-215ENST00000531924 MYF6P23409 242 aa11.57□□□□□ -0.56
VPS28-215ENST00000531924 CDX1P47902 265 aaPredicted RBP11.57□□□□□ -0.56
VPS28-215ENST00000531924 ZNF137PP52743 207 aa11.57□□□□□ -0.56
VPS28-215ENST00000531924 F2RL1P55085 397 aa11.57□□□□□ -0.56
VPS28-215ENST00000531924 KIR2DS1Q14954 304 aa11.57□□□□□ -0.56
VPS28-215ENST00000531924 MMDQ15546 238 aa11.57□□□□□ -0.56
VPS28-215ENST00000531924 DEFB136Q30KP8 78 aa11.57□□□□□ -0.56
VPS28-215ENST00000531924 NKAPLQ5M9Q1 402 aa11.57□□□□□ -0.56
VPS28-215ENST00000531924 C8orf59Q8N0T1 100 aaPredicted RBP11.57□□□□□ -0.56
VPS28-215ENST00000531924 ZNF439Q8NDP4 499 aa11.57□□□□□ -0.56
VPS28-215ENST00000531924 FAM46BQ96A09 425 aa11.57□□□□□ -0.56
VPS28-215ENST00000531924 DERL3Q96Q80 235 aa11.57□□□□□ -0.56
VPS28-215ENST00000531924 UQCC2Q9BRT2 126 aa11.57□□□□□ -0.56
VPS28-215ENST00000531924 LANCL1O43813 399 aa11.56□□□□□ -0.56
VPS28-215ENST00000531924 PDCD6O75340 191 aa11.56□□□□□ -0.56
VPS28-215ENST00000531924 SLC2A2P11168 524 aaPredicted RBP11.56□□□□□ -0.56
VPS28-215ENST00000531924 VHLP40337 213 aa11.56□□□□□ -0.56
VPS28-215ENST00000531924 ZNF134P52741 427 aa11.56□□□□□ -0.56
VPS28-215ENST00000531924 WNT4P56705 351 aa11.56□□□□□ -0.56
VPS28-215ENST00000531924 C9orf66Q5T8R8 295 aa11.56□□□□□ -0.56
VPS28-215ENST00000531924 AHSA2Q719I0 299 aa11.56□□□□□ -0.56
VPS28-215ENST00000531924 GALMQ96C23 342 aa11.56□□□□□ -0.56
VPS28-215ENST00000531924 KCTD7Q96MP8 289 aa11.56□□□□□ -0.56
VPS28-215ENST00000531924 NEDD4LQ96PU5 975 aa11.56□□□□□ -0.56
VPS28-215ENST00000531924 HSPB9Q9BQS6 159 aa11.56□□□□□ -0.56
VPS28-215ENST00000531924 ZNF251Q9BRH9 671 aa11.56□□□□□ -0.56
VPS28-215ENST00000531924 ABHD14AQ9BUJ0 271 aa11.56□□□□□ -0.56
VPS28-215ENST00000531924 CNOT2Q9NZN8 540 aaKnown RBP11.56□□□□□ -0.56
VPS28-215ENST00000531924 ABRACLQ9P1F3 81 aa11.56□□□□□ -0.56
VPS28-215ENST00000531924 GHRLQ9UBU3 117 aa11.56□□□□□ -0.56
VPS28-215ENST00000531924 ERGIC3Q9Y282 383 aa11.56□□□□□ -0.56
VPS28-215ENST00000531924 LRRC42Q9Y546 428 aa11.56□□□□□ -0.56
VPS28-215ENST00000531924 SEC14L6B5MCN3 397 aa11.55□□□□□ -0.56
VPS28-215ENST00000531924 IGHG4P01861 327 aa11.55□□□□□ -0.56
VPS28-215ENST00000531924 UBBP0CG47 229 aa11.55□□□□□ -0.56
VPS28-215ENST00000531924 LUMP51884 338 aaPredicted RBP11.55□□□□□ -0.56
VPS28-215ENST00000531924 ADARB1P78563 741 aaKnown RBP11.55□□□□□ -0.56
VPS28-215ENST00000531924 LSAMPQ13449 338 aa11.55□□□□□ -0.56
VPS28-215ENST00000531924 MORN2Q502X0 79 aa11.55□□□□□ -0.56
VPS28-215ENST00000531924 ZNF554Q86TJ5 538 aa11.55□□□□□ -0.56
VPS28-215ENST00000531924 GAPTQ8N292 157 aa11.55□□□□□ -0.56
VPS28-215ENST00000531924 FAM71E2Q8N5Q1 922 aa11.55□□□□□ -0.56
VPS28-215ENST00000531924 ZNF485Q8NCK3 441 aa11.55□□□□□ -0.56
VPS28-215ENST00000531924 BPIFB6Q8NFQ5 453 aa11.55□□□□□ -0.56
VPS28-215ENST00000531924 OR52L2PQ8NGH6 319 aa11.55□□□□□ -0.56
VPS28-215ENST00000531924 C4orf3Q8WVX3 66 aa11.55□□□□□ -0.56
VPS28-215ENST00000531924 Q96M66 194 aa11.55□□□□□ -0.56
VPS28-215ENST00000531924 CHCHD6Q9BRQ6 235 aa11.55□□□□□ -0.56
VPS28-215ENST00000531924 CHMP1AQ9HD42 196 aaPredicted RBP11.55□□□□□ -0.56
VPS28-215ENST00000531924 STEAP1Q9UHE8 339 aa11.55□□□□□ -0.56
VPS28-215ENST00000531924 JPT1Q9UK76 154 aa11.55□□□□□ -0.56
VPS28-215ENST00000531924 SC5DO75845 299 aa11.54□□□□□ -0.56
VPS28-215ENST00000531924 IGF1P05019 195 aa11.54□□□□□ -0.56
VPS28-215ENST00000531924 CD1AP06126 327 aa11.54□□□□□ -0.56
VPS28-215ENST00000531924 PPP1CCP36873 323 aaKnown RBP11.54□□□□□ -0.56
VPS28-215ENST00000531924 ECI1P42126 302 aa11.54□□□□□ -0.56
VPS28-215ENST00000531924 ACTBP60709 375 aa11.54□□□□□ -0.56
VPS28-215ENST00000531924 GNMTQ14749 295 aa11.54□□□□□ -0.56
VPS28-215ENST00000531924 RNF152Q8N8N0 203 aa11.54□□□□□ -0.56
VPS28-215ENST00000531924 OR2AK2Q8NG84 335 aa11.54□□□□□ -0.56
VPS28-215ENST00000531924 WWC2-AS2Q96NR7 200 aa11.54□□□□□ -0.56
VPS28-215ENST00000531924 PARP11Q9NR21 331 aa11.54□□□□□ -0.56
VPS28-215ENST00000531924 MBNL3Q9NUK0 354 aaKnown RBP11.54□□□□□ -0.56
VPS28-215ENST00000531924 KIAA1456Q9P272 454 aa11.54□□□□□ -0.56
VPS28-215ENST00000531924 PSORS1C1Q9UIG5 152 aa11.54□□□□□ -0.56
VPS28-215ENST00000531924 WSB1Q9Y6I7 421 aa11.54□□□□□ -0.56
VPS28-215ENST00000531924 NHLRC4P0CG21 123 aaPredicted RBP11.53□□□□□ -0.56
VPS28-215ENST00000531924 HTD2P86397 168 aa11.53□□□□□ -0.56
VPS28-215ENST00000531924 RCN1Q15293 331 aa11.53□□□□□ -0.56
VPS28-215ENST00000531924 GLT8D1Q68CQ7 371 aa11.53□□□□□ -0.56
VPS28-215ENST00000531924 MS4A15Q8N5U1 240 aa11.53□□□□□ -0.56
VPS28-215ENST00000531924 SETD6Q8TBK2 473 aa11.53□□□□□ -0.56
VPS28-215ENST00000531924 MRPL30Q8TCC3 161 aaKnown RBP11.53□□□□□ -0.56
VPS28-215ENST00000531924 IL1F10Q8WWZ1 152 aa11.53□□□□□ -0.56
VPS28-215ENST00000531924 MRPL20Q9BYC9 149 aaKnown RBP11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms