RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 IGKV1D-39P04432 117 aa16.36■□□□□ 0.21
VPS28-213ENST00000530983 SSTP61278 116 aa16.36■□□□□ 0.21
VPS28-213ENST00000530983 IGFBP7Q16270 282 aa16.36■□□□□ 0.21
VPS28-213ENST00000530983 ABHD17BQ5VST6 288 aa16.36■□□□□ 0.21
VPS28-213ENST00000530983 ZNF343Q6P1L6 599 aa16.36■□□□□ 0.21
VPS28-213ENST00000530983 SPNS3Q6ZMD2 512 aa16.36■□□□□ 0.21
VPS28-213ENST00000530983 NUFIP2Q7Z417 695 aaKnown RBP16.36■□□□□ 0.21
VPS28-213ENST00000530983 THNSL2Q86YJ6 484 aa16.36■□□□□ 0.21
VPS28-213ENST00000530983 IL1F10Q8WWZ1 152 aa16.36■□□□□ 0.21
VPS28-213ENST00000530983 C14orf144Q96I85 54 aa16.36■□□□□ 0.21
VPS28-213ENST00000530983 SPRY4Q9C004 299 aa16.36■□□□□ 0.21
VPS28-213ENST00000530983 OR51B6Q9H340 312 aa16.36■□□□□ 0.21
VPS28-213ENST00000530983 MPC1Q9Y5U8 109 aa16.36■□□□□ 0.21
VPS28-213ENST00000530983 OR5B21A6NL26 309 aa16.35■□□□□ 0.21
VPS28-213ENST00000530983 ATXN7O15265 892 aaPredicted RBP16.35■□□□□ 0.21
VPS28-213ENST00000530983 CXCL1P09341 107 aa16.35■□□□□ 0.21
VPS28-213ENST00000530983 RPL23AP62750 156 aaKnown RBP16.35■□□□□ 0.21
VPS28-213ENST00000530983 PLP2Q04941 152 aa16.35■□□□□ 0.21
VPS28-213ENST00000530983 C3AR1Q16581 482 aa16.35■□□□□ 0.21
VPS28-213ENST00000530983 TCEAL6Q6IPX3 200 aa16.35■□□□□ 0.21
VPS28-213ENST00000530983 C1orf210Q8IVY1 113 aa16.35■□□□□ 0.21
VPS28-213ENST00000530983 RAB40CQ96S21 281 aa16.35■□□□□ 0.21
VPS28-213ENST00000530983 HBE1P02100 147 aa16.35■□□□□ 0.21
VPS28-213ENST00000530983 OR1C1Q15619 314 aa16.35■□□□□ 0.21
VPS28-213ENST00000530983 P4HA3Q7Z4N8 544 aa16.35■□□□□ 0.21
VPS28-213ENST00000530983 TMEM251Q8N6I4 163 aa16.35■□□□□ 0.21
VPS28-213ENST00000530983 OR10V1Q8NGI7 309 aa16.35■□□□□ 0.21
VPS28-213ENST00000530983 OR10D4PQ8NGN7 298 aa16.35■□□□□ 0.21
VPS28-213ENST00000530983 Q8WTZ3 238 aa16.35■□□□□ 0.21
VPS28-213ENST00000530983 OR51I2Q9H344 312 aa16.35■□□□□ 0.21
VPS28-213ENST00000530983 TRAV39A0A0B4J263 110 aa16.34■□□□□ 0.21
VPS28-213ENST00000530983 C9orf172C9J069 976 aa16.34■□□□□ 0.21
VPS28-213ENST00000530983 DEGS1O15121 323 aa16.34■□□□□ 0.21
VPS28-213ENST00000530983 WNT2P09544 360 aa16.34■□□□□ 0.21
VPS28-213ENST00000530983 RNF224P0DH78 156 aa16.34■□□□□ 0.21
VPS28-213ENST00000530983 ELOBQ15370 118 aa16.34■□□□□ 0.21
VPS28-213ENST00000530983 ZNF674Q2M3X9 581 aa16.34■□□□□ 0.21
VPS28-213ENST00000530983 DNLZQ5SXM8 178 aa16.34■□□□□ 0.21
VPS28-213ENST00000530983 ZNF610Q8N9Z0 462 aa16.34■□□□□ 0.21
VPS28-213ENST00000530983 ZPBPQ9BS86 351 aa16.34■□□□□ 0.21
VPS28-213ENST00000530983 PLA2G3Q9NZ20 509 aa16.34■□□□□ 0.21
VPS28-213ENST00000530983 TRAV1-1A0A0B4J248 108 aa16.34■□□□□ 0.21
VPS28-213ENST00000530983 NPIPB11E5RHQ5 1161 aa16.34■□□□□ 0.21
VPS28-213ENST00000530983 CA6P23280 308 aa16.34■□□□□ 0.21
VPS28-213ENST00000530983 KHDC3LQ587J8 217 aa16.34■□□□□ 0.21
VPS28-213ENST00000530983 OR2T2Q6IF00 324 aa16.34■□□□□ 0.21
VPS28-213ENST00000530983 Q6P435 159 aa16.34■□□□□ 0.21
VPS28-213ENST00000530983 TVP23CQ96ET8 276 aa16.34■□□□□ 0.21
VPS28-213ENST00000530983 NIPSNAP3BQ9BS92 247 aa16.34■□□□□ 0.21
VPS28-213ENST00000530983 RSG1Q9BU20 258 aa16.34■□□□□ 0.21
VPS28-213ENST00000530983 PKIBQ9C010 78 aa16.34■□□□□ 0.21
VPS28-213ENST00000530983 CACNG5Q9UF02 275 aa16.34■□□□□ 0.21
VPS28-213ENST00000530983 FAM186AA6NE01 2351 aa16.34■□□□□ 0.21
VPS28-213ENST00000530983 LOC102723971A0A1B0GUV8 181 aa16.33■□□□□ 0.2
VPS28-213ENST00000530983 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP16.33■□□□□ 0.2
VPS28-213ENST00000530983 HIST1H2BKO60814 126 aa16.33■□□□□ 0.2
VPS28-213ENST00000530983 CNOT4O95628 575 aaKnown RBP16.33■□□□□ 0.2
VPS28-213ENST00000530983 IFNA5P01569 189 aa16.33■□□□□ 0.2
VPS28-213ENST00000530983 HIST1H2BJP06899 126 aa16.33■□□□□ 0.2
VPS28-213ENST00000530983 HIST1H1BP16401 226 aaKnown RBP16.33■□□□□ 0.2
VPS28-213ENST00000530983 HIST1H2BOP23527 126 aa16.33■□□□□ 0.2
VPS28-213ENST00000530983 HIST1H2BBP33778 126 aa16.33■□□□□ 0.2
VPS28-213ENST00000530983 HIST1H2BDP58876 126 aa16.33■□□□□ 0.2
VPS28-213ENST00000530983 HIST1H2BCP62807 126 aa16.33■□□□□ 0.2
VPS28-213ENST00000530983 TESK1Q15569 626 aa16.33■□□□□ 0.2
VPS28-213ENST00000530983 HIST2H2BEQ16778 126 aa16.33■□□□□ 0.2
VPS28-213ENST00000530983 HIST2H2BFQ5QNW6 126 aaPredicted RBP16.33■□□□□ 0.2
VPS28-213ENST00000530983 GFI1BQ5VTD9 330 aa16.33■□□□□ 0.2
VPS28-213ENST00000530983 RNASE11Q8TAA1 199 aaKnown RBP16.33■□□□□ 0.2
VPS28-213ENST00000530983 HIST1H2BHQ93079 126 aa16.33■□□□□ 0.2
VPS28-213ENST00000530983 HIST1H2BNQ99877 126 aa16.33■□□□□ 0.2
VPS28-213ENST00000530983 HIST1H2BMQ99879 126 aa16.33■□□□□ 0.2
VPS28-213ENST00000530983 UFSP2Q9NUQ7 469 aa16.33■□□□□ 0.2
VPS28-213ENST00000530983 PRSS50Q9UI38 385 aa16.33■□□□□ 0.2
VPS28-213ENST00000530983 COLQQ9Y215 455 aaPredicted RBP16.33■□□□□ 0.2
VPS28-213ENST00000530983 A0A1B0GV90 55 aa16.33■□□□□ 0.2
VPS28-213ENST00000530983 IGKV1-5P01602 117 aa16.33■□□□□ 0.2
VPS28-213ENST00000530983 APLNRP35414 380 aa16.33■□□□□ 0.2
VPS28-213ENST00000530983 ERVFRD-1P60508 538 aa16.33■□□□□ 0.2
VPS28-213ENST00000530983 LPAL2Q16609 132 aa16.33■□□□□ 0.2
VPS28-213ENST00000530983 SLC25A24Q6NUK1 477 aa16.33■□□□□ 0.2
VPS28-213ENST00000530983 LSM10Q969L4 123 aaKnown RBP16.33■□□□□ 0.2
VPS28-213ENST00000530983 FOXJ2Q9P0K8 574 aa16.33■□□□□ 0.2
VPS28-213ENST00000530983 URGCP-MRPS24S4R325 110 aa16.33■□□□□ 0.2
VPS28-213ENST00000530983 MED13Q9UHV7 2174 aa16.32■□□□□ 0.2
VPS28-213ENST00000530983 ARL16Q0P5N6 197 aa16.32■□□□□ 0.2
VPS28-213ENST00000530983 SPATA46Q5T0L3 261 aa16.32■□□□□ 0.2
VPS28-213ENST00000530983 SLC35E3Q7Z769 313 aa16.32■□□□□ 0.2
VPS28-213ENST00000530983 VSIRQ9H7M9 311 aa16.32■□□□□ 0.2
VPS28-213ENST00000530983 RPRMQ9NS64 109 aa16.32■□□□□ 0.2
VPS28-213ENST00000530983 GFOD1Q9NXC2 390 aa16.32■□□□□ 0.2
VPS28-213ENST00000530983 R4GN57 208 aa16.32■□□□□ 0.2
VPS28-213ENST00000530983 PIGBOS1A0A0B4J2F0 54 aa16.31■□□□□ 0.2
VPS28-213ENST00000530983 A0A1W2PR80 420 aa16.31■□□□□ 0.2
VPS28-213ENST00000530983 SEC14L6B5MCN3 397 aa16.31■□□□□ 0.2
VPS28-213ENST00000530983 J3QT63 122 aa16.31■□□□□ 0.2
VPS28-213ENST00000530983 SYNGR2O43760 224 aa16.31■□□□□ 0.2
VPS28-213ENST00000530983 IL18BPO95998 194 aa16.31■□□□□ 0.2
VPS28-213ENST00000530983 SOD3P08294 240 aa16.31■□□□□ 0.2
VPS28-213ENST00000530983 JMJD7P0C870 316 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms