RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 AP4S1Q9Y587 144 aa11.33□□□□□ -0.6
TRAF4-212ENST00000498540 SAC3D1A6NKF1 404 aa11.32□□□□□ -0.6
TRAF4-212ENST00000498540 HBZP02008 142 aa11.32□□□□□ -0.6
TRAF4-212ENST00000498540 CSTBP04080 98 aaKnown RBP11.32□□□□□ -0.6
TRAF4-212ENST00000498540 LGALS1P09382 135 aaKnown RBP11.32□□□□□ -0.6
TRAF4-212ENST00000498540 OR8U9P0C7N5 309 aa11.32□□□□□ -0.6
TRAF4-212ENST00000498540 SNRPGP62308 76 aaKnown RBP11.32□□□□□ -0.6
TRAF4-212ENST00000498540 ECSCRQ19T08 205 aa11.32□□□□□ -0.6
TRAF4-212ENST00000498540 MPV17LQ2QL34 196 aa11.32□□□□□ -0.6
TRAF4-212ENST00000498540 C19orf54Q5BKX5 351 aa11.32□□□□□ -0.6
TRAF4-212ENST00000498540 SYT6Q5T7P8 510 aaPredicted RBP11.32□□□□□ -0.6
TRAF4-212ENST00000498540 Q8N1Y9 231 aa11.32□□□□□ -0.6
TRAF4-212ENST00000498540 OR4K15Q8NH41 348 aa11.32□□□□□ -0.6
TRAF4-212ENST00000498540 MRPL48Q96GC5 212 aaKnown RBP11.32□□□□□ -0.6
TRAF4-212ENST00000498540 MRPL20Q9BYC9 149 aaKnown RBP11.32□□□□□ -0.6
TRAF4-212ENST00000498540 GHITMQ9H3K2 345 aa11.32□□□□□ -0.6
TRAF4-212ENST00000498540 CHCHD3Q9NX63 227 aaKnown RBP11.32□□□□□ -0.6
TRAF4-212ENST00000498540 HYDINQ4G0P3 5121 aa11.31□□□□□ -0.6
TRAF4-212ENST00000498540 A0A1W2PN81 502 aa11.31□□□□□ -0.6
TRAF4-212ENST00000498540 NBR2O15453 112 aa11.31□□□□□ -0.6
TRAF4-212ENST00000498540 SPINT2O43291 252 aa11.31□□□□□ -0.6
TRAF4-212ENST00000498540 RPSAP08865 295 aaKnown RBP11.31□□□□□ -0.6
TRAF4-212ENST00000498540 ZNF93P35789 620 aaPredicted RBP11.31□□□□□ -0.6
TRAF4-212ENST00000498540 CHRNA7P36544 502 aa11.31□□□□□ -0.6
TRAF4-212ENST00000498540 VEGFCP49767 419 aa11.31□□□□□ -0.6
TRAF4-212ENST00000498540 GTF2A1P52655 376 aaPredicted RBP11.31□□□□□ -0.6
TRAF4-212ENST00000498540 ADARB1P78563 741 aaKnown RBP11.31□□□□□ -0.6
TRAF4-212ENST00000498540 GNMTQ14749 295 aa11.31□□□□□ -0.6
TRAF4-212ENST00000498540 C5orf64Q2M2E5 130 aa11.31□□□□□ -0.6
TRAF4-212ENST00000498540 DDI2Q5TDH0 399 aa11.31□□□□□ -0.6
TRAF4-212ENST00000498540 MEDAGQ5VYS4 303 aa11.31□□□□□ -0.6
TRAF4-212ENST00000498540 CYYR1Q96J86 154 aa11.31□□□□□ -0.6
TRAF4-212ENST00000498540 ZNF251Q9BRH9 671 aa11.31□□□□□ -0.6
TRAF4-212ENST00000498540 C19orf73Q9NVV2 129 aa11.31□□□□□ -0.6
TRAF4-212ENST00000498540 ERVK13-1Q9NX77 482 aa11.31□□□□□ -0.6
TRAF4-212ENST00000498540 TRAPPC2LQ9UL33 140 aa11.31□□□□□ -0.6
TRAF4-212ENST00000498540 MRPS28Q9Y2Q9 187 aaKnown RBP11.31□□□□□ -0.6
TRAF4-212ENST00000498540 FCGR1AP12314 374 aa11.3□□□□□ -0.6
TRAF4-212ENST00000498540 RCC1P18754 421 aaPredicted RBP11.3□□□□□ -0.6
TRAF4-212ENST00000498540 PITPNAQ00169 270 aa11.3□□□□□ -0.6
TRAF4-212ENST00000498540 TMEM30BQ3MIR4 351 aa11.3□□□□□ -0.6
TRAF4-212ENST00000498540 SLC22A6Q4U2R8 563 aa11.3□□□□□ -0.6
TRAF4-212ENST00000498540 C5orf24Q7Z6I8 188 aa11.3□□□□□ -0.6
TRAF4-212ENST00000498540 LYPD6Q86Y78 171 aa11.3□□□□□ -0.6
TRAF4-212ENST00000498540 ODF3L1Q8IXM7 274 aa11.3□□□□□ -0.6
TRAF4-212ENST00000498540 STX19Q8N4C7 294 aa11.3□□□□□ -0.6
TRAF4-212ENST00000498540 TMEM106AQ96A25 262 aa11.3□□□□□ -0.6
TRAF4-212ENST00000498540 ORAI1Q96D31 301 aa11.3□□□□□ -0.6
TRAF4-212ENST00000498540 CENPNQ96H22 339 aaPredicted RBP11.3□□□□□ -0.6
TRAF4-212ENST00000498540 NABP2Q9BQ15 211 aa11.3□□□□□ -0.6
TRAF4-212ENST00000498540 TMEM138Q9NPI0 162 aa11.3□□□□□ -0.6
TRAF4-212ENST00000498540 RCC2Q9P258 522 aaKnown RBP11.3□□□□□ -0.6
TRAF4-212ENST00000498540 A8MZ25 164 aa11.29□□□□□ -0.6
TRAF4-212ENST00000498540 IGHV3-11P01762 117 aa11.29□□□□□ -0.6
TRAF4-212ENST00000498540 CRIP2P52943 208 aaPredicted RBP11.29□□□□□ -0.6
TRAF4-212ENST00000498540 GBX2P52951 348 aaPredicted RBP11.29□□□□□ -0.6
TRAF4-212ENST00000498540 MRPL28Q13084 256 aaKnown RBP11.29□□□□□ -0.6
TRAF4-212ENST00000498540 MORN2Q502X0 79 aa11.29□□□□□ -0.6
TRAF4-212ENST00000498540 C6orf183Q5T699 404 aa11.29□□□□□ -0.6
TRAF4-212ENST00000498540 STEAP3Q658P3 488 aa11.29□□□□□ -0.6
TRAF4-212ENST00000498540 XAF1Q6GPH4 301 aa11.29□□□□□ -0.6
TRAF4-212ENST00000498540 LIN54Q6MZP7 749 aa11.29□□□□□ -0.6
TRAF4-212ENST00000498540 NPBQ8NG41 125 aa11.29□□□□□ -0.6
TRAF4-212ENST00000498540 OR4C12Q96R67 309 aa11.29□□□□□ -0.6
TRAF4-212ENST00000498540 S100A13Q99584 98 aa11.29□□□□□ -0.6
TRAF4-212ENST00000498540 ABHD14AQ9BUJ0 271 aa11.29□□□□□ -0.6
TRAF4-212ENST00000498540 OR2S2Q9NQN1 319 aa11.29□□□□□ -0.6
TRAF4-212ENST00000498540 ETAA1Q9NY74 926 aa11.29□□□□□ -0.6
TRAF4-212ENST00000498540 FOXA2Q9Y261 457 aaPredicted RBP11.29□□□□□ -0.6
TRAF4-212ENST00000498540 A3GALT2U3KPV4 340 aa11.29□□□□□ -0.6
TRAF4-212ENST00000498540 SNTNA6NMZ2 147 aa11.28□□□□□ -0.6
TRAF4-212ENST00000498540 MCRIP1C9JLW8 97 aa11.28□□□□□ -0.6
TRAF4-212ENST00000498540 HSPA12AO43301 675 aa11.28□□□□□ -0.6
TRAF4-212ENST00000498540 NDUFA3O95167 84 aa11.28□□□□□ -0.6
TRAF4-212ENST00000498540 ALPLP05186 524 aa11.28□□□□□ -0.6
TRAF4-212ENST00000498540 CD2P06729 351 aa11.28□□□□□ -0.6
TRAF4-212ENST00000498540 GTF2F2P13984 249 aa11.28□□□□□ -0.6
TRAF4-212ENST00000498540 GABRB1P18505 474 aa11.28□□□□□ -0.6
TRAF4-212ENST00000498540 PPP1CCP36873 323 aaKnown RBP11.28□□□□□ -0.6
TRAF4-212ENST00000498540 OR3A3P47888 321 aa11.28□□□□□ -0.6
TRAF4-212ENST00000498540 PPP3R1P63098 170 aa11.28□□□□□ -0.6
TRAF4-212ENST00000498540 LRRC36Q1X8D7 754 aa11.28□□□□□ -0.6
TRAF4-212ENST00000498540 ZIK1Q3SY52 487 aaPredicted RBP11.28□□□□□ -0.6
TRAF4-212ENST00000498540 RAB12Q6IQ22 244 aa11.28□□□□□ -0.6
TRAF4-212ENST00000498540 SGPP2Q8IWX5 399 aa11.28□□□□□ -0.6
TRAF4-212ENST00000498540 GAPTQ8N292 157 aa11.28□□□□□ -0.6
TRAF4-212ENST00000498540 OR52L2PQ8NGH6 319 aa11.28□□□□□ -0.6
TRAF4-212ENST00000498540 GPR148Q8TDV2 347 aa11.28□□□□□ -0.6
TRAF4-212ENST00000498540 MYCBPQ99417 103 aaPredicted RBP11.28□□□□□ -0.6
TRAF4-212ENST00000498540 SPATA25Q9BR10 227 aa11.28□□□□□ -0.6
TRAF4-212ENST00000498540 CST11Q9H112 138 aa11.28□□□□□ -0.6
TRAF4-212ENST00000498540 TAF9BQ9HBM6 251 aa11.28□□□□□ -0.6
TRAF4-212ENST00000498540 AMBNQ9NP70 447 aa11.28□□□□□ -0.6
TRAF4-212ENST00000498540 RAB9BQ9NP90 201 aa11.28□□□□□ -0.6
TRAF4-212ENST00000498540 PAK1IP1Q9NWT1 392 aaPredicted RBP11.28□□□□□ -0.6
TRAF4-212ENST00000498540 NKX1-2Q9UD57 310 aaPredicted RBP11.28□□□□□ -0.6
TRAF4-212ENST00000498540 TNCP24821 2201 aa11.27□□□□□ -0.61
TRAF4-212ENST00000498540 ZNF780AO75290 641 aaPredicted RBP11.27□□□□□ -0.61
TRAF4-212ENST00000498540 FADS2O95864 444 aaKnown RBP11.27□□□□□ -0.61
TRAF4-212ENST00000498540 IGLV1-51P01701 117 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms