RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 MT-ND4P03905 459 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 IGHV3-43DP0DP04 118 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 BLVRBP30043 206 aaPredicted RBP6.29□□□□□ -1.4
USP39-216ENST00000490193 ZNF134P52741 427 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 RBM11P57052 281 aaKnown RBP6.29□□□□□ -1.4
USP39-216ENST00000490193 RSU1Q15404 277 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 HAGHQ16775 308 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 C5orf64Q2M2E5 130 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 MPV17LQ2QL34 196 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 CT45A1Q5HYN5 189 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 GAPTQ8N292 157 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 TCTEX1D1Q8N7M0 179 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 NPBQ8NG41 125 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 CT45A3Q8NHU0 189 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 IL17DQ8TAD2 202 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 TNFAIP8L1Q8WVP5 186 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 FLYWCH2Q96CP2 140 aaKnown RBP6.29□□□□□ -1.4
USP39-216ENST00000490193 OR4C12Q96R67 309 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 CIB1Q99828 191 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 GABARAPL3Q9BY60 117 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 KRTAP4-9Q9BYQ8 210 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 CST11Q9H112 138 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 RIBC2Q9H4K1 309 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 RAB9BQ9NP90 201 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 PARP11Q9NR21 331 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 STUB1Q9UNE7 303 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 ST3GAL6Q9Y274 331 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 FRAS1Q86XX4 4008 aa6.29□□□□□ -1.4
USP39-216ENST00000490193 DAPL1A0PJW8 107 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 TMEM212A6NML5 194 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 C12orf77C9JDV5 145 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 NBR2O15453 112 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 MAGEB3O15480 346 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 HTR3BO95264 441 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 HSPB1P04792 205 aaKnown RBP6.28□□□□□ -1.4
USP39-216ENST00000490193 IFNA6P05013 189 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 RAB3AP20336 220 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 POLR2IP36954 125 aaKnown RBP6.28□□□□□ -1.4
USP39-216ENST00000490193 ACTBP60709 375 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 NDPQ00604 133 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 ATP6AP1Q15904 470 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 SLC25A30Q5SVS4 291 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 LPCAT4Q643R3 524 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 ZNF660Q6AZW8 331 aaPredicted RBP6.28□□□□□ -1.4
USP39-216ENST00000490193 PYHIN1Q6K0P9 492 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 CD200R1LQ6Q8B3 271 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 ZDHHC13Q8IUH4 622 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 SYS1Q8N2H4 156 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 ACBD7Q8N6N7 88 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 OR51A2Q8NGJ7 313 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 OR10K1Q8NGX5 313 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 OR52N1Q8NH53 320 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 UBALD1Q8TB05 177 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 TRUB1Q8WWH5 349 aaKnown RBP6.28□□□□□ -1.4
USP39-216ENST00000490193 RBMXL1Q96E39 390 aaKnown RBP6.28□□□□□ -1.4
USP39-216ENST00000490193 C4orf36Q96KX1 117 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 GPER1Q99527 375 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 ELOVL1Q9BW60 279 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 ANKRD60Q9BZ19 345 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 RCC2Q9P258 522 aaKnown RBP6.28□□□□□ -1.4
USP39-216ENST00000490193 POMPQ9Y244 141 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 FOXA2Q9Y261 457 aaPredicted RBP6.28□□□□□ -1.4
USP39-216ENST00000490193 ERGIC3Q9Y282 383 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 FBXO7Q9Y3I1 522 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 GMPPBQ9Y5P6 360 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 RYR1P21817 5038 aa6.28□□□□□ -1.4
USP39-216ENST00000490193 A0A1W2PN81 502 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 J3QLW9 94 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 AIPO00170 330 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 GEMIN2O14893 280 aaKnown RBP6.27□□□□□ -1.41
USP39-216ENST00000490193 SPINT2O43291 252 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 ZNF19P17023 458 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 CNTFRP26992 372 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 CHRNA7P36544 502 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 GNGT1P63211 74 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 RAB40BQ12829 278 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 MRPL28Q13084 256 aaKnown RBP6.27□□□□□ -1.41
USP39-216ENST00000490193 C6orf183Q5T699 404 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 LIN54Q6MZP7 749 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 TRAT1Q6PIZ9 186 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 ODF3L1Q8IXM7 274 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 OR5AK2Q8NH90 309 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 CCDC107Q8WV48 283 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 MRPL48Q96GC5 212 aaKnown RBP6.27□□□□□ -1.41
USP39-216ENST00000490193 RITA1Q96K30 269 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 RHOVQ96L33 236 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 NABP2Q9BQ15 211 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 ZNF251Q9BRH9 671 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 THAP7Q9BT49 309 aaPredicted RBP6.27□□□□□ -1.41
USP39-216ENST00000490193 JAM3Q9BX67 310 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 FAM192AQ9GZU8 254 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 METTL9Q9H1A3 318 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 PAK1IP1Q9NWT1 392 aaPredicted RBP6.27□□□□□ -1.41
USP39-216ENST00000490193 GNG12Q9UBI6 72 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 DHDHQ9UQ10 334 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 EXOGQ9Y2C4 368 aaKnown RBP6.27□□□□□ -1.41
USP39-216ENST00000490193 TMA7Q9Y2S6 64 aaKnown RBP6.27□□□□□ -1.41
USP39-216ENST00000490193 NUBP2Q9Y5Y2 271 aa6.27□□□□□ -1.41
USP39-216ENST00000490193 ATP8B1O43520 1251 aa6.26□□□□□ -1.41
USP39-216ENST00000490193 ZNF780AO75290 641 aaPredicted RBP6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms