RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 CNOT4O95628 575 aaKnown RBP15.21■□□□□ 0.03
VIM-206ENST00000487938 CEACAM1P13688 526 aa15.21■□□□□ 0.03
VIM-206ENST00000487938 SELEP16581 610 aa15.21■□□□□ 0.03
VIM-206ENST00000487938 ALKBH6Q3KRA9 238 aa15.21■□□□□ 0.03
VIM-206ENST00000487938 SP5Q6BEB4 398 aaPredicted RBP15.21■□□□□ 0.03
VIM-206ENST00000487938 CYB561D1Q8N8Q1 229 aa15.21■□□□□ 0.03
VIM-206ENST00000487938 SCCPDHQ8NBX0 429 aa15.21■□□□□ 0.03
VIM-206ENST00000487938 RAB39BQ96DA2 213 aa15.21■□□□□ 0.03
VIM-206ENST00000487938 RSG1Q9BU20 258 aa15.21■□□□□ 0.03
VIM-206ENST00000487938 OR2J1Q9GZK6 312 aa15.21■□□□□ 0.03
VIM-206ENST00000487938 GP6Q9HCN6 339 aa15.21■□□□□ 0.03
VIM-206ENST00000487938 KLF13Q9Y2Y9 288 aaPredicted RBP15.21■□□□□ 0.03
VIM-206ENST00000487938 BTBD17A6NE02 478 aa15.2■□□□□ 0.02
VIM-206ENST00000487938 CDIPTO14735 213 aa15.2■□□□□ 0.02
VIM-206ENST00000487938 NQO2P16083 231 aa15.2■□□□□ 0.02
VIM-206ENST00000487938 TAGLN2P37802 199 aaKnown RBP15.2■□□□□ 0.02
VIM-206ENST00000487938 OR8G5Q8NG78 346 aa15.2■□□□□ 0.02
VIM-206ENST00000487938 WDR1O75083 606 aa15.2■□□□□ 0.02
VIM-206ENST00000487938 IFNA5P01569 189 aa15.2■□□□□ 0.02
VIM-206ENST00000487938 METTL15P1P0C7V9 234 aa15.2■□□□□ 0.02
VIM-206ENST00000487938 TLE4Q04727 773 aa15.2■□□□□ 0.02
VIM-206ENST00000487938 RNFT1Q5M7Z0 435 aa15.2■□□□□ 0.02
VIM-206ENST00000487938 ZNF429Q86V71 674 aa15.2■□□□□ 0.02
VIM-206ENST00000487938 MDS2Q8NDY4 140 aa15.2■□□□□ 0.02
VIM-206ENST00000487938 CLDND2Q8NHS1 167 aa15.2■□□□□ 0.02
VIM-206ENST00000487938 WDYHV1Q96HA8 205 aa15.2■□□□□ 0.02
VIM-206ENST00000487938 SPRR3Q9UBC9 169 aa15.2■□□□□ 0.02
VIM-206ENST00000487938 IGKV1-5P01602 117 aa15.19■□□□□ 0.02
VIM-206ENST00000487938 UBE2KP61086 200 aa15.19■□□□□ 0.02
VIM-206ENST00000487938 ARL16Q0P5N6 197 aa15.19■□□□□ 0.02
VIM-206ENST00000487938 DHRS13Q6UX07 377 aa15.19■□□□□ 0.02
VIM-206ENST00000487938 RAB40CQ96S21 281 aa15.19■□□□□ 0.02
VIM-206ENST00000487938 RTL8AQ9BWD3 113 aa15.19■□□□□ 0.02
VIM-206ENST00000487938 IFT22Q9H7X7 185 aa15.19■□□□□ 0.02
VIM-206ENST00000487938 PSENENQ9NZ42 101 aa15.19■□□□□ 0.02
VIM-206ENST00000487938 WSB1Q9Y6I7 421 aa15.19■□□□□ 0.02
VIM-206ENST00000487938 KIAA2026Q5HYC2 2103 aa15.19■□□□□ 0.02
VIM-206ENST00000487938 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.19■□□□□ 0.02
VIM-206ENST00000487938 SYNGR2O43760 224 aa15.19■□□□□ 0.02
VIM-206ENST00000487938 CD59P13987 128 aa15.19■□□□□ 0.02
VIM-206ENST00000487938 CEACAM6P40199 344 aa15.19■□□□□ 0.02
VIM-206ENST00000487938 TBC1D28Q2M2D7 210 aa15.19■□□□□ 0.02
VIM-206ENST00000487938 ZNF585BQ52M93 769 aa15.19■□□□□ 0.02
VIM-206ENST00000487938 ZNF497Q6ZNH5 498 aa15.19■□□□□ 0.02
VIM-206ENST00000487938 NANOS1Q8WY41 292 aaKnown RBP15.19■□□□□ 0.02
VIM-206ENST00000487938 VSIRQ9H7M9 311 aa15.19■□□□□ 0.02
VIM-206ENST00000487938 MMP24Q9Y5R2 645 aa15.19■□□□□ 0.02
VIM-206ENST00000487938 DFFBO76075 338 aa15.18■□□□□ 0.02
VIM-206ENST00000487938 TNFSF15O95150 251 aa15.18■□□□□ 0.02
VIM-206ENST00000487938 GRPP07492 148 aa15.18■□□□□ 0.02
VIM-206ENST00000487938 ZNF806P0C7X5 589 aa15.18■□□□□ 0.02
VIM-206ENST00000487938 CEBPDP49716 269 aaPredicted RBP15.18■□□□□ 0.02
VIM-206ENST00000487938 DLK1P80370 383 aa15.18■□□□□ 0.02
VIM-206ENST00000487938 OR8G1Q15617 311 aa15.18■□□□□ 0.02
VIM-206ENST00000487938 ZNF506Q5JVG8 444 aa15.18■□□□□ 0.02
VIM-206ENST00000487938 LOXL4Q96JB6 756 aa15.18■□□□□ 0.02
VIM-206ENST00000487938 YPEL4Q96NS1 127 aa15.18■□□□□ 0.02
VIM-206ENST00000487938 NCOR1O75376 2440 aa15.18■□□□□ 0.02
VIM-206ENST00000487938 NXPH2O95156 264 aa15.18■□□□□ 0.02
VIM-206ENST00000487938 SLC25A6P12236 298 aa15.18■□□□□ 0.02
VIM-206ENST00000487938 IDH3GP51553 393 aaPredicted RBP15.18■□□□□ 0.02
VIM-206ENST00000487938 HOXA4Q00056 320 aaPredicted RBP15.18■□□□□ 0.02
VIM-206ENST00000487938 PLA2G2CQ5R387 149 aa15.18■□□□□ 0.02
VIM-206ENST00000487938 ZNF343Q6P1L6 599 aa15.18■□□□□ 0.02
VIM-206ENST00000487938 TMPRSS7Q7RTY8 843 aa15.18■□□□□ 0.02
VIM-206ENST00000487938 MUCL1Q96DR8 90 aa15.18■□□□□ 0.02
VIM-206ENST00000487938 UNKLQ9H9P5 680 aaKnown RBP15.18■□□□□ 0.02
VIM-206ENST00000487938 GNG13Q9P2W3 67 aa15.18■□□□□ 0.02
VIM-206ENST00000487938 OR14J1Q9UGF5 321 aa15.18■□□□□ 0.02
VIM-206ENST00000487938 TRGV5A0A0B4J1U4 118 aa15.17■□□□□ 0.02
VIM-206ENST00000487938 RPS10P46783 165 aaKnown RBP15.17■□□□□ 0.02
VIM-206ENST00000487938 PPP1CBP62140 327 aa15.17■□□□□ 0.02
VIM-206ENST00000487938 HEPN1Q6WQI6 88 aa15.17■□□□□ 0.02
VIM-206ENST00000487938 SCGB1C1Q8TD33 95 aa15.17■□□□□ 0.02
VIM-206ENST00000487938 RPRMQ9NS64 109 aa15.17■□□□□ 0.02
VIM-206ENST00000487938 RNF150Q9ULK6 438 aa15.17■□□□□ 0.02
VIM-206ENST00000487938 URGCP-MRPS24S4R325 110 aa15.17■□□□□ 0.02
VIM-206ENST00000487938 LRP5LA4QPB2 252 aa15.17■□□□□ 0.02
VIM-206ENST00000487938 IGHV2-5P01817 119 aa15.17■□□□□ 0.02
VIM-206ENST00000487938 HSPB1P04792 205 aaKnown RBP15.17■□□□□ 0.02
VIM-206ENST00000487938 OR8U8P0C7N1 319 aa15.17■□□□□ 0.02
VIM-206ENST00000487938 CD46P15529 392 aa15.17■□□□□ 0.02
VIM-206ENST00000487938 RAB2AP61019 212 aa15.17■□□□□ 0.02
VIM-206ENST00000487938 FAM180AQ6UWF9 173 aa15.17■□□□□ 0.02
VIM-206ENST00000487938 LCN15Q6UWW0 184 aa15.17■□□□□ 0.02
VIM-206ENST00000487938 LSM10Q969L4 123 aaKnown RBP15.17■□□□□ 0.02
VIM-206ENST00000487938 RBMXL1Q96E39 390 aaKnown RBP15.17■□□□□ 0.02
VIM-206ENST00000487938 MALSU1Q96EH3 234 aa15.17■□□□□ 0.02
VIM-206ENST00000487938 METTL1Q9UBP6 276 aaKnown RBP15.17■□□□□ 0.02
VIM-206ENST00000487938 DIDO1Q9BTC0 2240 aaKnown RBP15.16■□□□□ 0.02
VIM-206ENST00000487938 CDX4O14627 284 aaPredicted RBP15.16■□□□□ 0.02
VIM-206ENST00000487938 SMPD2O60906 423 aa15.16■□□□□ 0.02
VIM-206ENST00000487938 HBE1P02100 147 aa15.16■□□□□ 0.02
VIM-206ENST00000487938 S100A9P06702 114 aaKnown RBP15.16■□□□□ 0.02
VIM-206ENST00000487938 MDH2P40926 338 aaKnown RBP15.16■□□□□ 0.02
VIM-206ENST00000487938 FGF8P55075 233 aaPredicted RBP15.16■□□□□ 0.02
VIM-206ENST00000487938 ERVK11-1P61568 191 aa15.16■□□□□ 0.02
VIM-206ENST00000487938 PMP22Q01453 160 aa15.16■□□□□ 0.02
VIM-206ENST00000487938 FAM53AQ6NSI3 398 aaPredicted RBP15.16■□□□□ 0.02
VIM-206ENST00000487938 HAPLN4Q86UW8 402 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms