RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 NABP2Q9BQ15 211 aa11.75□□□□□ -0.53
MCF2L-228ENST00000487354 GHITMQ9H3K2 345 aa11.75□□□□□ -0.53
MCF2L-228ENST00000487354 RETNQ9HD89 108 aa11.75□□□□□ -0.53
MCF2L-228ENST00000487354 RCC2Q9P258 522 aaKnown RBP11.75□□□□□ -0.53
MCF2L-228ENST00000487354 EXOGQ9Y2C4 368 aaKnown RBP11.75□□□□□ -0.53
MCF2L-228ENST00000487354 MRPS28Q9Y2Q9 187 aaKnown RBP11.75□□□□□ -0.53
MCF2L-228ENST00000487354 A0A1W2PN81 502 aa11.74□□□□□ -0.53
MCF2L-228ENST00000487354 AIPO00170 330 aa11.74□□□□□ -0.53
MCF2L-228ENST00000487354 IGHV3-11P01762 117 aa11.74□□□□□ -0.53
MCF2L-228ENST00000487354 HBZP02008 142 aa11.74□□□□□ -0.53
MCF2L-228ENST00000487354 SNRPBP14678 240 aaKnown RBP11.74□□□□□ -0.53
MCF2L-228ENST00000487354 RAB3AP20336 220 aa11.74□□□□□ -0.53
MCF2L-228ENST00000487354 CHRNA7P36544 502 aa11.74□□□□□ -0.53
MCF2L-228ENST00000487354 PITPNAQ00169 270 aa11.74□□□□□ -0.53
MCF2L-228ENST00000487354 LRRC36Q1X8D7 754 aa11.74□□□□□ -0.53
MCF2L-228ENST00000487354 AMIGO2Q86SJ2 522 aa11.74□□□□□ -0.53
MCF2L-228ENST00000487354 ACBD7Q8N6N7 88 aa11.74□□□□□ -0.53
MCF2L-228ENST00000487354 GPER1Q99527 375 aa11.74□□□□□ -0.53
MCF2L-228ENST00000487354 JAM3Q9BX67 310 aa11.74□□□□□ -0.53
MCF2L-228ENST00000487354 GNG12Q9UBI6 72 aa11.74□□□□□ -0.53
MCF2L-228ENST00000487354 ENOPH1Q9UHY7 261 aa11.74□□□□□ -0.53
MCF2L-228ENST00000487354 DHDHQ9UQ10 334 aa11.74□□□□□ -0.53
MCF2L-228ENST00000487354 TMEM212A6NML5 194 aa11.73□□□□□ -0.53
MCF2L-228ENST00000487354 MPV17LQ2QL34 196 aa11.73□□□□□ -0.53
MCF2L-228ENST00000487354 SLC25A30Q5SVS4 291 aa11.73□□□□□ -0.53
MCF2L-228ENST00000487354 SYT6Q5T7P8 510 aaPredicted RBP11.73□□□□□ -0.53
MCF2L-228ENST00000487354 IL34Q6ZMJ4 242 aa11.73□□□□□ -0.53
MCF2L-228ENST00000487354 LINC00596Q86U02 117 aa11.73□□□□□ -0.53
MCF2L-228ENST00000487354 ZDHHC13Q8IUH4 622 aa11.73□□□□□ -0.53
MCF2L-228ENST00000487354 DNAH10Q8IVF4 4471 aa11.73□□□□□ -0.53
MCF2L-228ENST00000487354 SGPP2Q8IWX5 399 aa11.73□□□□□ -0.53
MCF2L-228ENST00000487354 TSEN15Q8WW01 171 aaKnown RBP11.73□□□□□ -0.53
MCF2L-228ENST00000487354 SLC7A6OSQ96CW6 309 aaPredicted RBP11.73□□□□□ -0.53
MCF2L-228ENST00000487354 LGALS12Q96DT0 336 aa11.73□□□□□ -0.53
MCF2L-228ENST00000487354 OR4C12Q96R67 309 aa11.73□□□□□ -0.53
MCF2L-228ENST00000487354 ALG8Q9BVK2 526 aa11.73□□□□□ -0.53
MCF2L-228ENST00000487354 CHCHD3Q9NX63 227 aaKnown RBP11.73□□□□□ -0.53
MCF2L-228ENST00000487354 AASSQ9UDR5 926 aa11.73□□□□□ -0.53
MCF2L-228ENST00000487354 FOXA2Q9Y261 457 aaPredicted RBP11.73□□□□□ -0.53
MCF2L-228ENST00000487354 HSPB1P04792 205 aaKnown RBP11.72□□□□□ -0.53
MCF2L-228ENST00000487354 RCC1P18754 421 aaPredicted RBP11.72□□□□□ -0.53
MCF2L-228ENST00000487354 SERPINA2P20848 420 aa11.72□□□□□ -0.53
MCF2L-228ENST00000487354 TMEM30BQ3MIR4 351 aa11.72□□□□□ -0.53
MCF2L-228ENST00000487354 MORN2Q502X0 79 aa11.72□□□□□ -0.53
MCF2L-228ENST00000487354 ATAD3CQ5T2N8 411 aa11.72□□□□□ -0.53
MCF2L-228ENST00000487354 STEAP3Q658P3 488 aa11.72□□□□□ -0.53
MCF2L-228ENST00000487354 LIN54Q6MZP7 749 aa11.72□□□□□ -0.53
MCF2L-228ENST00000487354 ZNF833PQ6ZTB9 187 aa11.72□□□□□ -0.53
MCF2L-228ENST00000487354 LHFPL3Q86UP9 236 aa11.72□□□□□ -0.53
MCF2L-228ENST00000487354 SYS1Q8N2H4 156 aa11.72□□□□□ -0.53
MCF2L-228ENST00000487354 OR4K15Q8NH41 348 aa11.72□□□□□ -0.53
MCF2L-228ENST00000487354 OR5AK2Q8NH90 309 aa11.72□□□□□ -0.53
MCF2L-228ENST00000487354 CPNE2Q96FN4 548 aaPredicted RBP11.72□□□□□ -0.53
MCF2L-228ENST00000487354 RHOVQ96L33 236 aa11.72□□□□□ -0.53
MCF2L-228ENST00000487354 STUB1Q9UNE7 303 aa11.72□□□□□ -0.53
MCF2L-228ENST00000487354 GAB2Q9UQC2 676 aa11.72□□□□□ -0.53
MCF2L-228ENST00000487354 NUBP2Q9Y5Y2 271 aa11.72□□□□□ -0.53
MCF2L-228ENST00000487354 FCN1O00602 326 aa11.71□□□□□ -0.53
MCF2L-228ENST00000487354 ARSBP15848 533 aa11.71□□□□□ -0.53
MCF2L-228ENST00000487354 OR3A3P47888 321 aa11.71□□□□□ -0.53
MCF2L-228ENST00000487354 SOX2P48431 317 aa11.71□□□□□ -0.53
MCF2L-228ENST00000487354 SNRPGP62308 76 aaKnown RBP11.71□□□□□ -0.53
MCF2L-228ENST00000487354 CX3CL1P78423 397 aa11.71□□□□□ -0.53
MCF2L-228ENST00000487354 LINC00322Q6ZN03 302 aaPredicted RBP11.71□□□□□ -0.53
MCF2L-228ENST00000487354 PRR18Q8N4B5 295 aa11.71□□□□□ -0.53
MCF2L-228ENST00000487354 ORAI1Q96D31 301 aa11.71□□□□□ -0.53
MCF2L-228ENST00000487354 ZNF251Q9BRH9 671 aa11.71□□□□□ -0.53
MCF2L-228ENST00000487354 ABHD14AQ9BUJ0 271 aa11.71□□□□□ -0.53
MCF2L-228ENST00000487354 CST11Q9H112 138 aa11.71□□□□□ -0.53
MCF2L-228ENST00000487354 METTL9Q9H1A3 318 aa11.71□□□□□ -0.53
MCF2L-228ENST00000487354 ING4Q9UNL4 249 aa11.71□□□□□ -0.53
MCF2L-228ENST00000487354 SAA2-SAA4A0A096LPE2 208 aa11.7□□□□□ -0.54
MCF2L-228ENST00000487354 SPINT2O43291 252 aa11.7□□□□□ -0.54
MCF2L-228ENST00000487354 SC5DO75845 299 aa11.7□□□□□ -0.54
MCF2L-228ENST00000487354 SAA2P0DJI9 122 aaPredicted RBP11.7□□□□□ -0.54
MCF2L-228ENST00000487354 GABRB1P18505 474 aa11.7□□□□□ -0.54
MCF2L-228ENST00000487354 PPP1CCP36873 323 aaKnown RBP11.7□□□□□ -0.54
MCF2L-228ENST00000487354 GTF2A1P52655 376 aaPredicted RBP11.7□□□□□ -0.54
MCF2L-228ENST00000487354 DNAL1Q4LDG9 190 aa11.7□□□□□ -0.54
MCF2L-228ENST00000487354 ZNF660Q6AZW8 331 aaPredicted RBP11.7□□□□□ -0.54
MCF2L-228ENST00000487354 XAF1Q6GPH4 301 aa11.7□□□□□ -0.54
MCF2L-228ENST00000487354 CD200R1LQ6Q8B3 271 aa11.7□□□□□ -0.54
MCF2L-228ENST00000487354 TCTEX1D1Q8N7M0 179 aa11.7□□□□□ -0.54
MCF2L-228ENST00000487354 CCDC197Q8NCU1 140 aa11.7□□□□□ -0.54
MCF2L-228ENST00000487354 OR52L2PQ8NGH6 319 aa11.7□□□□□ -0.54
MCF2L-228ENST00000487354 NEK7Q8TDX7 302 aa11.7□□□□□ -0.54
MCF2L-228ENST00000487354 TRUB1Q8WWH5 349 aaKnown RBP11.7□□□□□ -0.54
MCF2L-228ENST00000487354 FLYWCH2Q96CP2 140 aaKnown RBP11.7□□□□□ -0.54
MCF2L-228ENST00000487354 FAM110AQ9BQ89 295 aa11.7□□□□□ -0.54
MCF2L-228ENST00000487354 HIPK2Q9H2X6 1198 aa11.7□□□□□ -0.54
MCF2L-228ENST00000487354 FBXL15Q9H469 300 aa11.7□□□□□ -0.54
MCF2L-228ENST00000487354 OAZ3Q9UMX2 235 aa11.7□□□□□ -0.54
MCF2L-228ENST00000487354 A3GALT2U3KPV4 340 aa11.7□□□□□ -0.54
MCF2L-228ENST00000487354 MAGEB3O15480 346 aa11.69□□□□□ -0.54
MCF2L-228ENST00000487354 GYG2O15488 501 aa11.69□□□□□ -0.54
MCF2L-228ENST00000487354 FASP25445 335 aa11.69□□□□□ -0.54
MCF2L-228ENST00000487354 ZNF93P35789 620 aaPredicted RBP11.69□□□□□ -0.54
MCF2L-228ENST00000487354 RAB40BQ12829 278 aa11.69□□□□□ -0.54
MCF2L-228ENST00000487354 C6orf183Q5T699 404 aa11.69□□□□□ -0.54
MCF2L-228ENST00000487354 DDI2Q5TDH0 399 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms