RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 OR2AK2Q8NG84 335 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 OR11H6Q8NGC7 330 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 SPATA3Q8NHX4 192 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 UBALD1Q8TB05 177 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 PLPPR1Q8TBJ4 325 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 TNFRSF14Q92956 283 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 ZNF48Q96MX3 618 aaPredicted RBP6.54□□□□□ -1.36
USP40-216ENST00000485943 GINS4Q9BRT9 223 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 CHIAQ9BZP6 476 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 MMP28Q9H239 520 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 KCNK15Q9H427 330 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 NCOR1P1Q9H4R4 102 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 ZNF696Q9H7X3 374 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 TAF9BQ9HBM6 251 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 C12orf4Q9NQ89 552 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 FBXL7Q9UJT9 491 aa6.54□□□□□ -1.36
USP40-216ENST00000485943 TMEM272A0A1B0GTI8 110 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 TMEM14DPA8MWL7 114 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 OOSP1A8MZH6 123 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 J3QR06 171 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 TXNL1O43396 289 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 FCN3O75636 299 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 HBZP02008 142 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 MT-ND4P03905 459 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 GAPDHP04406 335 aaKnown RBP6.53□□□□□ -1.36
USP40-216ENST00000485943 KIR2DS4P43632 304 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 KIR2DS1Q14954 304 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 HLA-DRB5Q30154 266 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 SFXN4Q6P4A7 337 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 MZT2AQ6P582 158 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 LHFPL4Q7Z7J7 247 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 LYG1Q8N1E2 194 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 OR52M1Q8NGK5 317 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 OR10R2Q8NGX6 335 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 AP3S1Q92572 193 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 LEAP2Q969E1 77 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 KIRREL1Q96J84 757 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 S1PR3Q99500 378 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 NICN1Q9BSH3 213 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 TM2D1Q9BX74 207 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 CDIP1Q9H305 208 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 ZNF286AQ9HBT8 521 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 ESM1Q9NQ30 184 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 SLC23A1Q9UHI7 598 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 SCOCQ9UIL1 159 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 ZNF221Q9UK13 617 aa6.53□□□□□ -1.36
USP40-216ENST00000485943 SOX21Q9Y651 276 aaPredicted RBP6.53□□□□□ -1.36
USP40-216ENST00000485943 A0A1W2PPE3 182 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 NCBP2LA6PVI3 153 aaKnown RBP6.52□□□□□ -1.37
USP40-216ENST00000485943 SERPINE3A8MV23 424 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 FAM25AB3EWG3 89 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 FAM25CB3EWG5 89 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 FAM25GB3EWG6 89 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 BUB1B-PAK6H3BSN5 160 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 HSD17B6O14756 317 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 BET1O15155 118 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 SOCS1O15524 211 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 TMEM127O75204 238 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 HKR1P10072 659 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 SLC2A2P11168 524 aaPredicted RBP6.52□□□□□ -1.37
USP40-216ENST00000485943 TMEM11P17152 192 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 ZBTB25P24278 435 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 CHATP28329 748 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 GP2P55259 537 aaKnown RBP6.52□□□□□ -1.37
USP40-216ENST00000485943 ARPC4P59998 168 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 PITPNAQ00169 270 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 PLGLAQ15195 96 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 AANATQ16613 207 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 TPTE2P1Q5T6R2 138 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 STEAP3Q658P3 488 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 CD200R1LQ6Q8B3 271 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 ZNF554Q86TJ5 538 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 TMEM219Q86XT9 240 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 TGIF2LXQ8IUE1 241 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 OR8H3Q8N146 312 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 OR10J5Q8NHC4 309 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 S100A16Q96FQ6 103 aaKnown RBP6.52□□□□□ -1.37
USP40-216ENST00000485943 ARHGAP5-AS1Q96IT6 56 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 SULT4A1Q9BR01 284 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 PECRQ9BY49 303 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 PRSS22Q9GZN4 317 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 LPAR5Q9H1C0 372 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 MEGF9Q9H1U4 602 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 IFT46Q9NQC8 304 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 RCC2Q9P258 522 aaKnown RBP6.52□□□□□ -1.37
USP40-216ENST00000485943 JPT1Q9UK76 154 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 PSG11Q9UQ72 335 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 RNF114Q9Y508 228 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 ETV7Q9Y603 341 aa6.52□□□□□ -1.37
USP40-216ENST00000485943 C12orf77C9JDV5 145 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 H7C2Y5 167 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 M0QZK8 103 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 MMP23AO75900 390 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 HIST1H1DP16402 221 aaKnown RBP6.51□□□□□ -1.37
USP40-216ENST00000485943 GNB3P16520 340 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 NAT1P18440 290 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 RCC1P18754 421 aaPredicted RBP6.51□□□□□ -1.37
USP40-216ENST00000485943 CEACAM6P40199 344 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 RAB13P51153 203 aa6.51□□□□□ -1.37
USP40-216ENST00000485943 RORCP51449 518 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms