RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 C1orf100Q5SVJ3 147 aa11.13□□□□□ -0.63
UPF3A-204ENST00000475218 C18orf65Q6ZTR6 163 aa11.13□□□□□ -0.63
UPF3A-204ENST00000475218 MOB3BQ86TA1 216 aa11.13□□□□□ -0.63
UPF3A-204ENST00000475218 OR10V1Q8NGI7 309 aa11.13□□□□□ -0.63
UPF3A-204ENST00000475218 MRPL30Q8TCC3 161 aaKnown RBP11.13□□□□□ -0.63
UPF3A-204ENST00000475218 FAM210AQ96ND0 272 aa11.13□□□□□ -0.63
UPF3A-204ENST00000475218 TRAPPC2LQ9UL33 140 aa11.13□□□□□ -0.63
UPF3A-204ENST00000475218 VSIG8P0DPA2 414 aa11.13□□□□□ -0.63
UPF3A-204ENST00000475218 QRFPP83859 136 aa11.13□□□□□ -0.63
UPF3A-204ENST00000475218 SPHARQ15513 63 aa11.13□□□□□ -0.63
UPF3A-204ENST00000475218 Q3ZCU0 254 aa11.13□□□□□ -0.63
UPF3A-204ENST00000475218 Q8N9W7 124 aa11.13□□□□□ -0.63
UPF3A-204ENST00000475218 GFI1Q99684 422 aa11.13□□□□□ -0.63
UPF3A-204ENST00000475218 TMED9Q9BVK6 235 aa11.13□□□□□ -0.63
UPF3A-204ENST00000475218 MND1Q9BWT6 205 aa11.13□□□□□ -0.63
UPF3A-204ENST00000475218 PSMB11A5LHX3 300 aa11.12□□□□□ -0.63
UPF3A-204ENST00000475218 PDCD6O75340 191 aa11.12□□□□□ -0.63
UPF3A-204ENST00000475218 GLAP06280 429 aa11.12□□□□□ -0.63
UPF3A-204ENST00000475218 SMIM18P0DKX4 95 aa11.12□□□□□ -0.63
UPF3A-204ENST00000475218 MAPK3P27361 379 aaPredicted RBP11.12□□□□□ -0.63
UPF3A-204ENST00000475218 CHATP28329 748 aa11.12□□□□□ -0.63
UPF3A-204ENST00000475218 UNC119Q13432 240 aa11.12□□□□□ -0.63
UPF3A-204ENST00000475218 GPR50Q13585 617 aa11.12□□□□□ -0.63
UPF3A-204ENST00000475218 TMEM91Q6ZNR0 172 aa11.12□□□□□ -0.63
UPF3A-204ENST00000475218 ODF3L1Q8IXM7 274 aa11.12□□□□□ -0.63
UPF3A-204ENST00000475218 PRR18Q8N4B5 295 aa11.12□□□□□ -0.63
UPF3A-204ENST00000475218 OR4X2Q8NGF9 303 aa11.12□□□□□ -0.63
UPF3A-204ENST00000475218 SULT4A1Q9BR01 284 aa11.12□□□□□ -0.63
UPF3A-204ENST00000475218 DUSP21Q9H596 190 aa11.12□□□□□ -0.63
UPF3A-204ENST00000475218 TAF9BQ9HBM6 251 aa11.12□□□□□ -0.63
UPF3A-204ENST00000475218 AURKAIP1Q9NWT8 199 aaPredicted RBP11.12□□□□□ -0.63
UPF3A-204ENST00000475218 A0A0A6YYD4 124 aa11.11□□□□□ -0.63
UPF3A-204ENST00000475218 CA11O75493 328 aa11.11□□□□□ -0.63
UPF3A-204ENST00000475218 MPIG6BO95866 241 aa11.11□□□□□ -0.63
UPF3A-204ENST00000475218 UCHL1P09936 223 aa11.11□□□□□ -0.63
UPF3A-204ENST00000475218 HTR2CP28335 458 aa11.11□□□□□ -0.63
UPF3A-204ENST00000475218 MS4A15Q8N5U1 240 aa11.11□□□□□ -0.63
UPF3A-204ENST00000475218 OR52L2PQ8NGH6 319 aa11.11□□□□□ -0.63
UPF3A-204ENST00000475218 PHYHIPQ92561 330 aa11.11□□□□□ -0.63
UPF3A-204ENST00000475218 THRSPQ92748 146 aa11.11□□□□□ -0.63
UPF3A-204ENST00000475218 NICN1Q9BSH3 213 aa11.11□□□□□ -0.63
UPF3A-204ENST00000475218 GHRLQ9UBU3 117 aa11.11□□□□□ -0.63
UPF3A-204ENST00000475218 SLC22A1O15245 554 aa11.11□□□□□ -0.63
UPF3A-204ENST00000475218 SPINT2O43291 252 aa11.11□□□□□ -0.63
UPF3A-204ENST00000475218 TFAP2AP05549 437 aa11.11□□□□□ -0.63
UPF3A-204ENST00000475218 PF4V1P10720 104 aa11.11□□□□□ -0.63
UPF3A-204ENST00000475218 CD1BP29016 333 aa11.11□□□□□ -0.63
UPF3A-204ENST00000475218 MORN2Q502X0 79 aa11.11□□□□□ -0.63
UPF3A-204ENST00000475218 C6orf183Q5T699 404 aa11.11□□□□□ -0.63
UPF3A-204ENST00000475218 CEACAM19Q7Z692 300 aa11.11□□□□□ -0.63
UPF3A-204ENST00000475218 TGIF2LXQ8IUE1 241 aa11.11□□□□□ -0.63
UPF3A-204ENST00000475218 LINC00482Q8N8I6 264 aa11.11□□□□□ -0.63
UPF3A-204ENST00000475218 ABCG5Q9H222 651 aa11.11□□□□□ -0.63
UPF3A-204ENST00000475218 NECAP2Q9NVZ3 263 aa11.11□□□□□ -0.63
UPF3A-204ENST00000475218 GNG12Q9UBI6 72 aa11.11□□□□□ -0.63
UPF3A-204ENST00000475218 TMEM14DPA8MWL7 114 aa11.1□□□□□ -0.63
UPF3A-204ENST00000475218 SRMP19623 302 aa11.1□□□□□ -0.63
UPF3A-204ENST00000475218 CD33P20138 364 aa11.1□□□□□ -0.63
UPF3A-204ENST00000475218 MYF6P23409 242 aa11.1□□□□□ -0.63
UPF3A-204ENST00000475218 GPR12P47775 334 aa11.1□□□□□ -0.63
UPF3A-204ENST00000475218 F2RL1P55085 397 aa11.1□□□□□ -0.63
UPF3A-204ENST00000475218 RPL23AP62750 156 aaKnown RBP11.1□□□□□ -0.63
UPF3A-204ENST00000475218 RPS25P62851 125 aaKnown RBP11.1□□□□□ -0.63
UPF3A-204ENST00000475218 RPS27AP62979 156 aaKnown RBP11.1□□□□□ -0.63
UPF3A-204ENST00000475218 TMEM30BQ3MIR4 351 aa11.1□□□□□ -0.63
UPF3A-204ENST00000475218 RBM48Q5RL73 367 aaKnown RBP11.1□□□□□ -0.63
UPF3A-204ENST00000475218 LIPKQ5VXJ0 399 aa11.1□□□□□ -0.63
UPF3A-204ENST00000475218 OR2W3Q7Z3T1 314 aa11.1□□□□□ -0.63
UPF3A-204ENST00000475218 C6orf201Q7Z4U5 140 aa11.1□□□□□ -0.63
UPF3A-204ENST00000475218 SLC35E3Q7Z769 313 aa11.1□□□□□ -0.63
UPF3A-204ENST00000475218 STPG2Q8N412 459 aa11.1□□□□□ -0.63
UPF3A-204ENST00000475218 FAM71E2Q8N5Q1 922 aa11.1□□□□□ -0.63
UPF3A-204ENST00000475218 OR2T10Q8NGZ9 312 aa11.1□□□□□ -0.63
UPF3A-204ENST00000475218 TMEM203Q969S6 136 aa11.1□□□□□ -0.63
UPF3A-204ENST00000475218 HSPB9Q9BQS6 159 aa11.1□□□□□ -0.63
UPF3A-204ENST00000475218 TM2D1Q9BX74 207 aa11.1□□□□□ -0.63
UPF3A-204ENST00000475218 RBM38Q9H0Z9 239 aaKnown RBP11.1□□□□□ -0.63
UPF3A-204ENST00000475218 SERPINE3A8MV23 424 aa11.09□□□□□ -0.63
UPF3A-204ENST00000475218 ZNF701M0R085 212 aaPredicted RBP11.09□□□□□ -0.63
UPF3A-204ENST00000475218 MOSP00540 346 aa11.09□□□□□ -0.63
UPF3A-204ENST00000475218 PPP1CCP36873 323 aaKnown RBP11.09□□□□□ -0.63
UPF3A-204ENST00000475218 KRTAP10-11P60412 298 aa11.09□□□□□ -0.63
UPF3A-204ENST00000475218 TPBGQ13641 420 aa11.09□□□□□ -0.63
UPF3A-204ENST00000475218 MED22Q15528 200 aa11.09□□□□□ -0.63
UPF3A-204ENST00000475218 KHDC1LQ5JSQ8 128 aa11.09□□□□□ -0.63
UPF3A-204ENST00000475218 NKAPLQ5M9Q1 402 aa11.09□□□□□ -0.63
UPF3A-204ENST00000475218 TRAT1Q6PIZ9 186 aa11.09□□□□□ -0.63
UPF3A-204ENST00000475218 REC114Q7Z4M0 266 aa11.09□□□□□ -0.63
UPF3A-204ENST00000475218 CHPT1Q8WUD6 406 aa11.09□□□□□ -0.63
UPF3A-204ENST00000475218 RITA1Q96K30 269 aa11.09□□□□□ -0.63
UPF3A-204ENST00000475218 S1PR3Q99500 378 aa11.09□□□□□ -0.63
UPF3A-204ENST00000475218 FAAP24Q9BTP7 215 aa11.09□□□□□ -0.63
UPF3A-204ENST00000475218 ANKRD60Q9BZ19 345 aa11.09□□□□□ -0.63
UPF3A-204ENST00000475218 CST11Q9H112 138 aa11.09□□□□□ -0.63
UPF3A-204ENST00000475218 OR2S2Q9NQN1 319 aa11.09□□□□□ -0.63
UPF3A-204ENST00000475218 LIN7CQ9NUP9 197 aaKnown RBP11.09□□□□□ -0.63
UPF3A-204ENST00000475218 FOXI3A8MTJ6 420 aaPredicted RBP11.08□□□□□ -0.64
UPF3A-204ENST00000475218 LANCL1O43813 399 aa11.08□□□□□ -0.64
UPF3A-204ENST00000475218 NAPSAO96009 420 aa11.08□□□□□ -0.64
UPF3A-204ENST00000475218 UBBP0CG47 229 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms