RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 TRAM1Q15629 374 aa9.54□□□□□ -0.88
USP40-210ENST00000454354 CT45A1Q5HYN5 189 aa9.54□□□□□ -0.88
USP40-210ENST00000454354 C9orf152Q5JTZ5 239 aa9.54□□□□□ -0.88
USP40-210ENST00000454354 STEAP3Q658P3 488 aa9.54□□□□□ -0.88
USP40-210ENST00000454354 C10orf99Q6UWK7 81 aa9.54□□□□□ -0.88
USP40-210ENST00000454354 TMEM91Q6ZNR0 172 aa9.54□□□□□ -0.88
USP40-210ENST00000454354 PRSS48Q7RTY5 328 aa9.54□□□□□ -0.88
USP40-210ENST00000454354 MOB3BQ86TA1 216 aa9.54□□□□□ -0.88
USP40-210ENST00000454354 CT45A3Q8NHU0 189 aa9.54□□□□□ -0.88
USP40-210ENST00000454354 KCNG3Q8TAE7 436 aa9.54□□□□□ -0.88
USP40-210ENST00000454354 EAF1Q96JC9 268 aaPredicted RBP9.54□□□□□ -0.88
USP40-210ENST00000454354 TM2D1Q9BX74 207 aa9.54□□□□□ -0.88
USP40-210ENST00000454354 TAF9BQ9HBM6 251 aa9.54□□□□□ -0.88
USP40-210ENST00000454354 GNG12Q9UBI6 72 aa9.54□□□□□ -0.88
USP40-210ENST00000454354 TCRBV4S1A1TA0A5B7 111 aa9.53□□□□□ -0.88
USP40-210ENST00000454354 BPNT1O95861 308 aa9.53□□□□□ -0.88
USP40-210ENST00000454354 IGHG2P01859 326 aa9.53□□□□□ -0.88
USP40-210ENST00000454354 CPEP16870 476 aa9.53□□□□□ -0.88
USP40-210ENST00000454354 HTD2P86397 168 aa9.53□□□□□ -0.88
USP40-210ENST00000454354 MLLT11Q13015 90 aaPredicted RBP9.53□□□□□ -0.88
USP40-210ENST00000454354 HNF4GQ14541 408 aa9.53□□□□□ -0.88
USP40-210ENST00000454354 HMGN3Q15651 99 aa9.53□□□□□ -0.88
USP40-210ENST00000454354 NKAPLQ5M9Q1 402 aa9.53□□□□□ -0.88
USP40-210ENST00000454354 LY6G6FQ5SQ64 297 aa9.53□□□□□ -0.88
USP40-210ENST00000454354 OR10K2Q6IF99 312 aa9.53□□□□□ -0.88
USP40-210ENST00000454354 IZUMO2Q6UXV1 221 aa9.53□□□□□ -0.88
USP40-210ENST00000454354 TGIF2LXQ8IUE1 241 aa9.53□□□□□ -0.88
USP40-210ENST00000454354 WFDC9Q8NEX5 89 aa9.53□□□□□ -0.88
USP40-210ENST00000454354 OR10V1Q8NGI7 309 aa9.53□□□□□ -0.88
USP40-210ENST00000454354 OR6M1Q8NGM8 313 aa9.53□□□□□ -0.88
USP40-210ENST00000454354 OR2T10Q8NGZ9 312 aa9.53□□□□□ -0.88
USP40-210ENST00000454354 CHPT1Q8WUD6 406 aa9.53□□□□□ -0.88
USP40-210ENST00000454354 NEDD4LQ96PU5 975 aa9.53□□□□□ -0.88
USP40-210ENST00000454354 GFI1Q99684 422 aa9.53□□□□□ -0.88
USP40-210ENST00000454354 SULT4A1Q9BR01 284 aa9.53□□□□□ -0.88
USP40-210ENST00000454354 KCNIP1Q9NZI2 227 aa9.53□□□□□ -0.88
USP40-210ENST00000454354 JPT1Q9UK76 154 aa9.53□□□□□ -0.88
USP40-210ENST00000454354 IGHV3-72A0A0B4J1Y9 119 aa9.52□□□□□ -0.89
USP40-210ENST00000454354 A0A1W2PRX2 142 aa9.52□□□□□ -0.89
USP40-210ENST00000454354 PSMB11A5LHX3 300 aa9.52□□□□□ -0.89
USP40-210ENST00000454354 SLC17A2O00624 439 aa9.52□□□□□ -0.89
USP40-210ENST00000454354 NAPSAO96009 420 aa9.52□□□□□ -0.89
USP40-210ENST00000454354 MOSP00540 346 aa9.52□□□□□ -0.89
USP40-210ENST00000454354 RPS25P62851 125 aaKnown RBP9.52□□□□□ -0.89
USP40-210ENST00000454354 TBCEQ15813 527 aaPredicted RBP9.52□□□□□ -0.89
USP40-210ENST00000454354 MORN2Q502X0 79 aa9.52□□□□□ -0.89
USP40-210ENST00000454354 ZNF880Q6PDB4 577 aa9.52□□□□□ -0.89
USP40-210ENST00000454354 OR2W3Q7Z3T1 314 aa9.52□□□□□ -0.89
USP40-210ENST00000454354 PRR18Q8N4B5 295 aa9.52□□□□□ -0.89
USP40-210ENST00000454354 Q8N9W7 124 aa9.52□□□□□ -0.89
USP40-210ENST00000454354 TMEM203Q969S6 136 aa9.52□□□□□ -0.89
USP40-210ENST00000454354 NICN1Q9BSH3 213 aa9.52□□□□□ -0.89
USP40-210ENST00000454354 ABHD14AQ9BUJ0 271 aa9.52□□□□□ -0.89
USP40-210ENST00000454354 KCNK15Q9H427 330 aa9.52□□□□□ -0.89
USP40-210ENST00000454354 OR2S2Q9NQN1 319 aa9.52□□□□□ -0.89
USP40-210ENST00000454354 PLSCR3Q9NRY6 295 aa9.52□□□□□ -0.89
USP40-210ENST00000454354 LIN7CQ9NUP9 197 aaKnown RBP9.52□□□□□ -0.89
USP40-210ENST00000454354 A0A0A6YYD4 124 aa9.51□□□□□ -0.89
USP40-210ENST00000454354 LANCL1O43813 399 aa9.51□□□□□ -0.89
USP40-210ENST00000454354 YPEL1O60688 119 aa9.51□□□□□ -0.89
USP40-210ENST00000454354 ARL6IP5O75915 188 aa9.51□□□□□ -0.89
USP40-210ENST00000454354 HSMCR30P0CW71 290 aa9.51□□□□□ -0.89
USP40-210ENST00000454354 PF4V1P10720 104 aa9.51□□□□□ -0.89
USP40-210ENST00000454354 LSAMPQ13449 338 aa9.51□□□□□ -0.89
USP40-210ENST00000454354 GNMTQ14749 295 aa9.51□□□□□ -0.89
USP40-210ENST00000454354 OXLD1Q5BKU9 147 aa9.51□□□□□ -0.89
USP40-210ENST00000454354 Q6ZPA2 131 aa9.51□□□□□ -0.89
USP40-210ENST00000454354 MOB1BQ7L9L4 216 aa9.51□□□□□ -0.89
USP40-210ENST00000454354 C6orf201Q7Z4U5 140 aa9.51□□□□□ -0.89
USP40-210ENST00000454354 SLC35E3Q7Z769 313 aa9.51□□□□□ -0.89
USP40-210ENST00000454354 ODF3L1Q8IXM7 274 aa9.51□□□□□ -0.89
USP40-210ENST00000454354 SVOPQ8N4V2 548 aa9.51□□□□□ -0.89
USP40-210ENST00000454354 FAM71E2Q8N5Q1 922 aa9.51□□□□□ -0.89
USP40-210ENST00000454354 OR8H1Q8NGG4 311 aa9.51□□□□□ -0.89
USP40-210ENST00000454354 NOL4LQ96MY1 436 aaPredicted RBP9.51□□□□□ -0.89
USP40-210ENST00000454354 YPEL2Q96QA6 119 aa9.51□□□□□ -0.89
USP40-210ENST00000454354 MGLLQ99685 303 aa9.51□□□□□ -0.89
USP40-210ENST00000454354 FAAP24Q9BTP7 215 aa9.51□□□□□ -0.89
USP40-210ENST00000454354 CCDC90BQ9GZT6 254 aa9.51□□□□□ -0.89
USP40-210ENST00000454354 LPAR5Q9H1C0 372 aa9.51□□□□□ -0.89
USP40-210ENST00000454354 ABCG5Q9H222 651 aa9.51□□□□□ -0.89
USP40-210ENST00000454354 LRRC42Q9Y546 428 aa9.51□□□□□ -0.89
USP40-210ENST00000454354 TRBV6-6A0A0A6YYG2 114 aa9.5□□□□□ -0.89
USP40-210ENST00000454354 NCBP2LA6PVI3 153 aaKnown RBP9.5□□□□□ -0.89
USP40-210ENST00000454354 FOXI3A8MTJ6 420 aaPredicted RBP9.5□□□□□ -0.89
USP40-210ENST00000454354 SERPINE3A8MV23 424 aa9.5□□□□□ -0.89
USP40-210ENST00000454354 ZNF736B4DX44 427 aaPredicted RBP9.5□□□□□ -0.89
USP40-210ENST00000454354 RGS11O94810 467 aa9.5□□□□□ -0.89
USP40-210ENST00000454354 ARSBP15848 533 aa9.5□□□□□ -0.89
USP40-210ENST00000454354 PPP1CCP36873 323 aaKnown RBP9.5□□□□□ -0.89
USP40-210ENST00000454354 MAP2K4P45985 399 aa9.5□□□□□ -0.89
USP40-210ENST00000454354 GPR12P47775 334 aa9.5□□□□□ -0.89
USP40-210ENST00000454354 RPL23AP62750 156 aaKnown RBP9.5□□□□□ -0.89
USP40-210ENST00000454354 FABP5Q01469 135 aa9.5□□□□□ -0.89
USP40-210ENST00000454354 ZNF367Q7RTV3 350 aa9.5□□□□□ -0.89
USP40-210ENST00000454354 REC114Q7Z4M0 266 aa9.5□□□□□ -0.89
USP40-210ENST00000454354 C5orf24Q7Z6I8 188 aa9.5□□□□□ -0.89
USP40-210ENST00000454354 FOXRED2Q8IWF2 684 aa9.5□□□□□ -0.89
USP40-210ENST00000454354 STPG2Q8N412 459 aa9.5□□□□□ -0.89
USP40-210ENST00000454354 FAM89BQ8N5H3 189 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms