RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 CXCL6P80162 114 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 EBPQ15125 230 aaKnown RBP1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 TEX30Q5JUR7 227 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 FAM222AQ5U5X8 452 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 TEX36Q5VZQ5 186 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF567Q8N184 647 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 OR52N1Q8NH53 320 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 SEH1LQ96EE3 360 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 GINS3Q9BRX5 216 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 RTBDNQ9BSG5 229 aaPredicted RBP1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 TMEM70Q9BUB7 260 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 CCDC90BQ9GZT6 254 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 RALGAPA1Q6GYQ0 2036 aa1.79□□□□□ -2.12
CCDC88A-208ENST00000444458 HIVEP2P31629 2446 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 SPG11Q96JI7 2443 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 WRNQ14191 1432 aaPredicted RBP eCLIP1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 ARHGAP35Q9NRY4 1499 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 PQLC2LA1A4F0 135 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 FAM159BA6NKW6 160 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 PEX7O00628 323 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF253O75346 499 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 IGLV1-44P01699 117 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 SOD3P08294 240 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 CTLA4P16410 223 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 ORM2P19652 201 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 KLK2P20151 261 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 PHBP35232 272 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 GABRA4P48169 554 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 MARCKSL1P49006 195 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 DIO3P55073 304 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 PFN3P60673 137 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 DPTQ07507 201 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 FABP9Q0Z7S8 132 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 LRRC26Q2I0M4 334 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 HENMT1Q5T8I9 393 aaKnown RBP1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 SFXN4Q6P4A7 337 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 TBPL2Q6SJ96 375 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 ACOT12Q8WYK0 555 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 FXYD5Q96DB9 178 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 F2RL3Q96RI0 385 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF717Q9BY31 904 aaPredicted RBP1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 NOX3Q9HBY0 568 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 PARP11Q9NR21 331 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 C14orf105Q9NVL8 296 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 SSR3Q9UNL2 185 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 SLC35A3Q9Y2D2 325 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 ARHGEF10O15013 1369 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 MARF1Q9Y4F3 1742 aaKnown RBP1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 ARL5CA6NH57 179 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 CCDC22O60826 627 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 NPIPB7O75200 414 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 OR5G3P0C626 314 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF708P17019 499 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 PSMB1P20618 241 aaKnown RBP1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 ERP29P30040 261 aaKnown RBP1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 GZMMP51124 257 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 EMP1P54849 157 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 DEFA1P59665 94 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 HLA-DRB3P79483 266 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 ERCC8Q13216 396 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 PNOCQ13519 176 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 DEFB115Q30KQ5 88 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 TIMM50Q3ZCQ8 353 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 SMARCD3Q6STE5 483 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 FA2HQ7L5A8 372 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 TCF23Q7RTU1 214 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 OOSP2Q86WS3 158 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 SRSF12Q8WXF0 261 aaKnown RBP1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 SLC25A44Q96H78 314 aaPredicted RBP1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 OR4K3Q96R72 315 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 CDX2Q99626 313 aaPredicted RBP1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 CDC42EP4Q9H3Q1 356 aaKnown RBP1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF331Q9NQX6 463 aaPredicted RBP1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 TAS2R5Q9NYW4 299 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 YTHDF2Q9Y5A9 579 aaKnown RBP1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 NUP188Q5SRE5 1749 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 TNS1Q9HBL0 1735 aaKnown RBP1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 NWD2Q9ULI1 1742 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 TRAV8-1A0A0A6YYK1 113 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 A0A1B0GXF2 115 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 PLAC8L1A1L4L8 177 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 BTNL10A8MVZ5 291 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 E7EQ34 232 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 GALR3O60755 368 aaPredicted RBP1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 SMIM24O75264 130 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 NDUFC2O95298 119 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 IGHV3-48P01763 117 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 OR4Q2P0C623 313 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 COX4I1P13073 169 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 UBE2AP49459 152 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 MP68P56378 58 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 Q499Y3 187 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF585BQ52M93 769 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 KLHL12Q53G59 568 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 TMEM128Q5BJH2 165 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 CYB5R2Q6BCY4 276 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 ACP7Q6ZNF0 438 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 C9orf47Q6ZRZ4 202 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 C20orf196Q8IYI0 205 aa1.78□□□□□ -2.12
CCDC88A-208ENST00000444458 ORAOV1Q8WV07 137 aa1.78□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms