RNA–Protein interactions for RNA: ENST00000434376.6

SCARF1-203, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 3,342 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-203ENST00000434376 GAR1Q9NY12 217 aaKnown RBP13.28□□□□□ -0.28
SCARF1-203ENST00000434376 FABP4P15090 132 aa13.28□□□□□ -0.28
SCARF1-203ENST00000434376 SPRY4Q9C004 299 aa13.28□□□□□ -0.28
SCARF1-203ENST00000434376 SLC35B3Q9H1N7 401 aa13.28□□□□□ -0.28
SCARF1-203ENST00000434376 RNF122Q9H9V4 155 aa13.28□□□□□ -0.28
SCARF1-203ENST00000434376 SVEP1Q4LDE5 3571 aa13.27□□□□□ -0.28
SCARF1-203ENST00000434376 BEND4Q6ZU67 534 aa13.27□□□□□ -0.28
SCARF1-203ENST00000434376 DPPA2Q7Z7J5 298 aa13.27□□□□□ -0.28
SCARF1-203ENST00000434376 TMEM178AQ8NBL3 297 aa13.27□□□□□ -0.28
SCARF1-203ENST00000434376 WDYHV1Q96HA8 205 aa13.27□□□□□ -0.28
SCARF1-203ENST00000434376 C1QTNF5Q9BXJ0 243 aa13.27□□□□□ -0.28
SCARF1-203ENST00000434376 DOK5Q9P104 306 aa13.27□□□□□ -0.28
SCARF1-203ENST00000434376 MPV17P39210 176 aa13.27□□□□□ -0.29
SCARF1-203ENST00000434376 VAMP2P63027 116 aa13.27□□□□□ -0.29
SCARF1-203ENST00000434376 OR8B8Q15620 311 aa13.27□□□□□ -0.29
SCARF1-203ENST00000434376 FAM201AQ5SY85 155 aa13.27□□□□□ -0.29
SCARF1-203ENST00000434376 FOXL2NBQ6ZUU3 175 aa13.27□□□□□ -0.29
SCARF1-203ENST00000434376 FAM58AQ8N1B3 248 aa13.27□□□□□ -0.29
SCARF1-203ENST00000434376 UBAC2Q8NBM4 344 aa13.27□□□□□ -0.29
SCARF1-203ENST00000434376 NTNG2Q96CW9 530 aa13.27□□□□□ -0.29
SCARF1-203ENST00000434376 WFDC1Q9HC57 220 aa13.27□□□□□ -0.29
SCARF1-203ENST00000434376 GABRA2P47869 451 aa13.26□□□□□ -0.29
SCARF1-203ENST00000434376 CCL20P78556 96 aa13.26□□□□□ -0.29
SCARF1-203ENST00000434376 HMGN3Q15651 99 aa13.26□□□□□ -0.29
SCARF1-203ENST00000434376 CLEC12BQ2HXU8 276 aa13.26□□□□□ -0.29
SCARF1-203ENST00000434376 BTNL3Q6UXE8 466 aa13.26□□□□□ -0.29
SCARF1-203ENST00000434376 OR2G3Q8NGZ4 309 aa13.26□□□□□ -0.29
SCARF1-203ENST00000434376 ZNF71Q9NQZ8 489 aaPredicted RBP13.26□□□□□ -0.29
SCARF1-203ENST00000434376 GFOD1Q9NXC2 390 aa13.26□□□□□ -0.29
SCARF1-203ENST00000434376 FBLN5Q9UBX5 448 aa13.26□□□□□ -0.29
SCARF1-203ENST00000434376 C3orf85A0A1B0GTC6 90 aa13.26□□□□□ -0.29
SCARF1-203ENST00000434376 CRYM-AS1A6NIL9 109 aa13.26□□□□□ -0.29
SCARF1-203ENST00000434376 HMGB3O15347 200 aaKnown RBP13.26□□□□□ -0.29
SCARF1-203ENST00000434376 CTSDP07339 412 aaPredicted RBP13.26□□□□□ -0.29
SCARF1-203ENST00000434376 FOLR2P14207 255 aa13.26□□□□□ -0.29
SCARF1-203ENST00000434376 ZNF83P51522 516 aa13.26□□□□□ -0.29
SCARF1-203ENST00000434376 RPS23P62266 143 aaKnown RBP13.26□□□□□ -0.29
SCARF1-203ENST00000434376 NKX6-1P78426 367 aaPredicted RBP13.26□□□□□ -0.29
SCARF1-203ENST00000434376 SPNS3Q6ZMD2 512 aa13.26□□□□□ -0.29
SCARF1-203ENST00000434376 SEBOXQ9HB31 216 aaPredicted RBP13.26□□□□□ -0.29
SCARF1-203ENST00000434376 TNCP24821 2201 aa13.26□□□□□ -0.29
SCARF1-203ENST00000434376 YLPM1P49750 1951 aaKnown RBP13.26□□□□□ -0.29
SCARF1-203ENST00000434376 DNPH1O43598 174 aa13.26□□□□□ -0.29
SCARF1-203ENST00000434376 TIMM8AO60220 97 aaPredicted RBP13.26□□□□□ -0.29
SCARF1-203ENST00000434376 DEDDO75618 318 aa13.26□□□□□ -0.29
SCARF1-203ENST00000434376 PPP1CBP62140 327 aa13.26□□□□□ -0.29
SCARF1-203ENST00000434376 AESQ08117 197 aa13.26□□□□□ -0.29
SCARF1-203ENST00000434376 HERPUD1Q15011 391 aa13.26□□□□□ -0.29
SCARF1-203ENST00000434376 RHEBQ15382 184 aa13.26□□□□□ -0.29
SCARF1-203ENST00000434376 TGIF2-C20orf24A0A0A6YYL0 155 aa13.25□□□□□ -0.29
SCARF1-203ENST00000434376 FOXI3A8MTJ6 420 aaPredicted RBP13.25□□□□□ -0.29
SCARF1-203ENST00000434376 KLK10O43240 276 aa13.25□□□□□ -0.29
SCARF1-203ENST00000434376 SERPINE2P07093 398 aa13.25□□□□□ -0.29
SCARF1-203ENST00000434376 IGHV1-2P23083 117 aa13.25□□□□□ -0.29
SCARF1-203ENST00000434376 TUBG1P23258 451 aa13.25□□□□□ -0.29
SCARF1-203ENST00000434376 TNFSF10P50591 281 aa13.25□□□□□ -0.29
SCARF1-203ENST00000434376 TMEM267Q0VDI3 215 aaPredicted RBP13.25□□□□□ -0.29
SCARF1-203ENST00000434376 GNMTQ14749 295 aa13.25□□□□□ -0.29
SCARF1-203ENST00000434376 TBC1D28Q2M2D7 210 aa13.25□□□□□ -0.29
SCARF1-203ENST00000434376 CEACAM21Q3KPI0 293 aa13.25□□□□□ -0.29
SCARF1-203ENST00000434376 PLA2G2CQ5R387 149 aa13.25□□□□□ -0.29
SCARF1-203ENST00000434376 MPPED1O15442 326 aa13.25□□□□□ -0.29
SCARF1-203ENST00000434376 GPX4P36969 197 aaPredicted RBP13.25□□□□□ -0.29
SCARF1-203ENST00000434376 ANKHD1Q8IWZ3 2542 aaKnown RBP13.25□□□□□ -0.29
SCARF1-203ENST00000434376 ARL6IP1Q15041 203 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 OR8G1Q15617 311 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 C9orf106Q8NAJ2 232 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 OR10J5Q8NHC4 309 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 CA5BP1Q8WTZ4 195 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 GTF3AQ92664 365 aaKnown RBP13.24□□□□□ -0.29
SCARF1-203ENST00000434376 NSG2Q9Y328 171 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 IGHV3OR15-7A0A075B7D8 119 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 IGKV1-6A0A0C4DH72 117 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 K7EM74 188 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 PPP1R2P9O14990 202 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 TRGC2P03986 189 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 GNG3P63215 75 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 GAMTQ14353 236 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 TMEM187Q14656 261 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 SURF2Q15527 256 aaPredicted RBP13.24□□□□□ -0.29
SCARF1-203ENST00000434376 LGI3Q8N145 548 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 ZFYVE26Q68DK2 2539 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 ZNF724A8MTY0 619 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 H3BQ15 152 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 ST8SIA3O43173 380 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 SOX15O60248 233 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 PSG2P11465 335 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 ARR3P36575 388 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 NKX2-1P43699 371 aaPredicted RBP13.24□□□□□ -0.29
SCARF1-203ENST00000434376 ZNF816Q0VGE8 651 aaPredicted RBP13.24□□□□□ -0.29
SCARF1-203ENST00000434376 ZNF154Q13106 437 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 DBX2Q6ZNG2 339 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 ZNF610Q8N9Z0 462 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 MRGPRDQ8TDS7 321 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 RAB39BQ96DA2 213 aa13.24□□□□□ -0.29
SCARF1-203ENST00000434376 IGHV2-5P01817 119 aa13.23□□□□□ -0.29
SCARF1-203ENST00000434376 CYC1P08574 325 aa13.23□□□□□ -0.29
SCARF1-203ENST00000434376 TGFBR3Q03167 851 aa13.23□□□□□ -0.29
SCARF1-203ENST00000434376 LIAT1Q6ZQX7 453 aa13.23□□□□□ -0.29
SCARF1-203ENST00000434376 CCDC54Q8NEL0 328 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms