RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 OR5H8P0DN80 308 aa11.35□□□□□ -0.59
SDC1-204ENST00000429035 RCC1P18754 421 aaPredicted RBP11.35□□□□□ -0.59
SDC1-204ENST00000429035 FSTP19883 344 aa11.35□□□□□ -0.59
SDC1-204ENST00000429035 VHLP40337 213 aa11.35□□□□□ -0.59
SDC1-204ENST00000429035 CDX1P47902 265 aaPredicted RBP11.35□□□□□ -0.59
SDC1-204ENST00000429035 ADARB1P78563 741 aaKnown RBP11.35□□□□□ -0.59
SDC1-204ENST00000429035 TMEM30BQ3MIR4 351 aa11.35□□□□□ -0.59
SDC1-204ENST00000429035 Q3ZCU0 254 aa11.35□□□□□ -0.59
SDC1-204ENST00000429035 YIF1BQ5BJH7 314 aa11.35□□□□□ -0.59
SDC1-204ENST00000429035 CT45A1Q5HYN5 189 aa11.35□□□□□ -0.59
SDC1-204ENST00000429035 NKAPLQ5M9Q1 402 aa11.35□□□□□ -0.59
SDC1-204ENST00000429035 TRAT1Q6PIZ9 186 aa11.35□□□□□ -0.59
SDC1-204ENST00000429035 FAM71E2Q8N5Q1 922 aa11.35□□□□□ -0.59
SDC1-204ENST00000429035 ZNF439Q8NDP4 499 aa11.35□□□□□ -0.59
SDC1-204ENST00000429035 OR11H1Q8NG94 326 aa11.35□□□□□ -0.59
SDC1-204ENST00000429035 CT45A3Q8NHU0 189 aa11.35□□□□□ -0.59
SDC1-204ENST00000429035 FAM46BQ96A09 425 aa11.35□□□□□ -0.59
SDC1-204ENST00000429035 CYYR1Q96J86 154 aa11.35□□□□□ -0.59
SDC1-204ENST00000429035 ABHD14AQ9BUJ0 271 aa11.35□□□□□ -0.59
SDC1-204ENST00000429035 MRPL20Q9BYC9 149 aaKnown RBP11.35□□□□□ -0.59
SDC1-204ENST00000429035 OR2S2Q9NQN1 319 aa11.35□□□□□ -0.59
SDC1-204ENST00000429035 PLSCR3Q9NRY6 295 aa11.35□□□□□ -0.59
SDC1-204ENST00000429035 RCC2Q9P258 522 aaKnown RBP11.35□□□□□ -0.59
SDC1-204ENST00000429035 DIMT1Q9UNQ2 313 aaKnown RBP11.35□□□□□ -0.59
SDC1-204ENST00000429035 WSB1Q9Y6I7 421 aa11.35□□□□□ -0.59
SDC1-204ENST00000429035 NBEAL2Q6ZNJ1 2754 aa11.35□□□□□ -0.59
SDC1-204ENST00000429035 IGHG4P01861 327 aa11.34□□□□□ -0.59
SDC1-204ENST00000429035 MGMTP16455 207 aa11.34□□□□□ -0.59
SDC1-204ENST00000429035 ZNF134P52741 427 aa11.34□□□□□ -0.59
SDC1-204ENST00000429035 ZNF137PP52743 207 aa11.34□□□□□ -0.59
SDC1-204ENST00000429035 CFHR3Q02985 330 aa11.34□□□□□ -0.59
SDC1-204ENST00000429035 DMKNQ6E0U4 476 aaPredicted RBP11.34□□□□□ -0.59
SDC1-204ENST00000429035 TMEM65Q6PI78 240 aa11.34□□□□□ -0.59
SDC1-204ENST00000429035 OR52L2PQ8NGH6 319 aa11.34□□□□□ -0.59
SDC1-204ENST00000429035 TMEM80Q96HE8 168 aa11.34□□□□□ -0.59
SDC1-204ENST00000429035 PGLYRP3Q96LB9 341 aa11.34□□□□□ -0.59
SDC1-204ENST00000429035 ZNF251Q9BRH9 671 aa11.34□□□□□ -0.59
SDC1-204ENST00000429035 GNB4Q9HAV0 340 aa11.34□□□□□ -0.59
SDC1-204ENST00000429035 TAF9BQ9HBM6 251 aa11.34□□□□□ -0.59
SDC1-204ENST00000429035 KCNIP1Q9NZI2 227 aa11.34□□□□□ -0.59
SDC1-204ENST00000429035 G3V318 75 aa11.33□□□□□ -0.6
SDC1-204ENST00000429035 MYL12BO14950 172 aa11.33□□□□□ -0.6
SDC1-204ENST00000429035 ATP6V0E1O15342 81 aa11.33□□□□□ -0.6
SDC1-204ENST00000429035 LANCL1O43813 399 aa11.33□□□□□ -0.6
SDC1-204ENST00000429035 NHLRC4P0CG21 123 aaPredicted RBP11.33□□□□□ -0.6
SDC1-204ENST00000429035 CNTFRP26992 372 aa11.33□□□□□ -0.6
SDC1-204ENST00000429035 PPP1CCP36873 323 aaKnown RBP11.33□□□□□ -0.6
SDC1-204ENST00000429035 CAPGP40121 348 aa11.33□□□□□ -0.6
SDC1-204ENST00000429035 ACTBP60709 375 aa11.33□□□□□ -0.6
SDC1-204ENST00000429035 ECSCRQ19T08 205 aa11.33□□□□□ -0.6
SDC1-204ENST00000429035 LRRC36Q1X8D7 754 aa11.33□□□□□ -0.6
SDC1-204ENST00000429035 C5orf24Q7Z6I8 188 aa11.33□□□□□ -0.6
SDC1-204ENST00000429035 RNF152Q8N8N0 203 aa11.33□□□□□ -0.6
SDC1-204ENST00000429035 RDH12Q96NR8 316 aa11.33□□□□□ -0.6
SDC1-204ENST00000429035 ZNF256Q9Y2P7 627 aaPredicted RBP11.33□□□□□ -0.6
SDC1-204ENST00000429035 OR8U8P0C7N1 319 aa11.32□□□□□ -0.6
SDC1-204ENST00000429035 PSMB8P28062 276 aa11.32□□□□□ -0.6
SDC1-204ENST00000429035 TAS2R43P59537 309 aa11.32□□□□□ -0.6
SDC1-204ENST00000429035 RPS11P62280 158 aaKnown RBP eCLIP11.32□□□□□ -0.6
SDC1-204ENST00000429035 MORN2Q502X0 79 aa11.32□□□□□ -0.6
SDC1-204ENST00000429035 SETD9Q8NE22 299 aa11.32□□□□□ -0.6
SDC1-204ENST00000429035 ABHD5Q8WTS1 349 aa11.32□□□□□ -0.6
SDC1-204ENST00000429035 MRPS24Q96EL2 167 aaKnown RBP11.32□□□□□ -0.6
SDC1-204ENST00000429035 Q96M66 194 aa11.32□□□□□ -0.6
SDC1-204ENST00000429035 ISYNA1Q9NPH2 558 aa11.32□□□□□ -0.6
SDC1-204ENST00000429035 KIAA1456Q9P272 454 aa11.32□□□□□ -0.6
SDC1-204ENST00000429035 JPT1Q9UK76 154 aa11.32□□□□□ -0.6
SDC1-204ENST00000429035 SORL1Q92673 2214 aa11.32□□□□□ -0.6
SDC1-204ENST00000429035 TRBV5-7A0A0A0MS05 114 aa11.31□□□□□ -0.6
SDC1-204ENST00000429035 NBR2O15453 112 aa11.31□□□□□ -0.6
SDC1-204ENST00000429035 PDCD6O75340 191 aa11.31□□□□□ -0.6
SDC1-204ENST00000429035 GPX5O75715 221 aa11.31□□□□□ -0.6
SDC1-204ENST00000429035 IGF1P05019 195 aa11.31□□□□□ -0.6
SDC1-204ENST00000429035 FUT3P21217 361 aa11.31□□□□□ -0.6
SDC1-204ENST00000429035 GNB1P62873 340 aa11.31□□□□□ -0.6
SDC1-204ENST00000429035 ZNF616Q08AN1 781 aa11.31□□□□□ -0.6
SDC1-204ENST00000429035 FHL3Q13643 280 aa11.31□□□□□ -0.6
SDC1-204ENST00000429035 NKAIN3Q8N8D7 197 aa11.31□□□□□ -0.6
SDC1-204ENST00000429035 OR1N2Q8NGR9 330 aa11.31□□□□□ -0.6
SDC1-204ENST00000429035 SETD6Q8TBK2 473 aa11.31□□□□□ -0.6
SDC1-204ENST00000429035 MRPL30Q8TCC3 161 aaKnown RBP11.31□□□□□ -0.6
SDC1-204ENST00000429035 IL1F10Q8WWZ1 152 aa11.31□□□□□ -0.6
SDC1-204ENST00000429035 DERL3Q96Q80 235 aa11.31□□□□□ -0.6
SDC1-204ENST00000429035 KLK15Q9H2R5 256 aa11.31□□□□□ -0.6
SDC1-204ENST00000429035 OR51J1Q9H342 316 aa11.31□□□□□ -0.6
SDC1-204ENST00000429035 CHMP1AQ9HD42 196 aaPredicted RBP11.31□□□□□ -0.6
SDC1-204ENST00000429035 VSIG4Q9Y279 399 aa11.31□□□□□ -0.6
SDC1-204ENST00000429035 LSM4Q9Y4Z0 139 aaKnown RBP11.31□□□□□ -0.6
SDC1-204ENST00000429035 A3GALT2U3KPV4 340 aa11.31□□□□□ -0.6
SDC1-204ENST00000429035 SAA2-SAA4A0A096LPE2 208 aa11.3□□□□□ -0.6
SDC1-204ENST00000429035 TRAV41A0A0B4J266 112 aa11.3□□□□□ -0.6
SDC1-204ENST00000429035 FAM90A10PA6NDY2 464 aa11.3□□□□□ -0.6
SDC1-204ENST00000429035 FAM90A7PA6NKC0 464 aa11.3□□□□□ -0.6
SDC1-204ENST00000429035 FAM90A23PA8MXZ1 464 aa11.3□□□□□ -0.6
SDC1-204ENST00000429035 CA11O75493 328 aa11.3□□□□□ -0.6
SDC1-204ENST00000429035 RGS11O94810 467 aa11.3□□□□□ -0.6
SDC1-204ENST00000429035 SAA2P0DJI9 122 aaPredicted RBP11.3□□□□□ -0.6
SDC1-204ENST00000429035 CELP19835 753 aa11.3□□□□□ -0.6
SDC1-204ENST00000429035 BLVRBP30043 206 aaPredicted RBP11.3□□□□□ -0.6
SDC1-204ENST00000429035 OR3A3P47888 321 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms