RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 SNRPGP62308 76 aaKnown RBP2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 HTD2P86397 168 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 TP53I3Q53FA7 332 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 PSMG4Q5JS54 123 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 MTURNQ8N3F0 131 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 Q8N976 141 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 FAM71CQ8NEG0 241 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 LFNGQ8NES3 379 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 RAB2BQ8WUD1 216 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 REEP6Q96HR9 211 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 KCNS1Q96KK3 526 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 SPAG8Q99932 426 aaPredicted RBP2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 NMES1Q9C002 83 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 SPRY4Q9C004 299 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 OR52A5Q9H2C5 316 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 HSD3B7Q9H2F3 369 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 MED20Q9H944 212 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 TMEM138Q9NPI0 162 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 CLCF1Q9UBD9 225 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 RRP15Q9Y3B9 282 aaKnown RBP2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 LRRC42Q9Y546 428 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 ATAD5Q96QE3 1844 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 RFPL4AA6NLU0 287 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 RFPL4AL1F8VTS6 287 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 OVOL3O00110 214 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 IGHV3-53P01767 116 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 AQP1P29972 269 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 EFNB2P52799 333 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 RPS26P62854 115 aaKnown RBP2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 CFHR3Q02985 330 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 FAM201AQ5SY85 155 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 CDPF1Q6NVV7 123 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 ZCCHC23Q6ZST2 131 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 CEND1Q8N111 149 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 YIPF7Q8N8F6 280 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 CYB561A3Q8NBI2 242 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 OR13F1Q8NGS4 319 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 OR13C8Q8NGS7 320 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 OR2K2Q8NGT1 345 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 TCP10LQ8TDR4 215 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 SECTM1Q8WVN6 248 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 TMEM45BQ96B21 275 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 LYZL4Q96KX0 146 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 KIR2DL4Q99706 377 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 URM1Q9BTM9 101 aaKnown RBP2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 TOLLIPQ9H0E2 274 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 GPR173Q9NS66 373 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 RAB22AQ9UL26 194 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 TMEM56-RWDD3S4R434 201 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 IGHV1-18A0A0C4DH31 117 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 FAM92AA1XBS5 289 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 CASQ2O14958 399 aaPredicted RBP2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 OR5F1O95221 314 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 HRASP01112 189 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 HSD17B1P14061 328 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 IGFBP6P24592 240 aaPredicted RBP2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 FGF9P31371 208 aaPredicted RBP2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 PRDX2P32119 198 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 SERPINB8P50452 374 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 DLX1P56177 255 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 FCN2Q15485 313 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 CDSNQ15517 529 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 CCDC153Q494R4 210 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 SPANXN3Q5MJ09 141 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 FAM74A1Q5RGS3 127 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 GCNT6Q5T4J0 391 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 CBLN3Q6UW01 205 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 CYP4V2Q6ZWL3 525 aaPredicted RBP2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 NEGR1Q7Z3B1 354 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 FAM216BQ8N7L0 139 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF709Q8N972 641 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 SPATA4Q8NEY3 305 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 OR4D11Q8NGI4 311 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 DIRC1Q969H9 104 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 ISOC2Q96AB3 205 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 SLC25A44Q96H78 314 aaPredicted RBP2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 PACRGQ96M98 296 aaPredicted RBP2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 RPRMQ9NS64 109 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 RHCGQ9UBD6 479 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 MPC1Q9Y5U8 109 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 MYH2Q9UKX2 1941 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 TMEM30CPA0ZSE6 113 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 C2CD4BA6NLJ0 364 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 M0R1X1 148 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 BMPR1BO00238 502 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 NDUFAB1O14561 156 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 ENTPD6O75354 484 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 RP2O75695 350 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 NKX2-2O95096 273 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 IGHV1-46P01743 117 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 LGALS1P09382 135 aaKnown RBP2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 OR10J4P0C629 311 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 GZMHP20718 246 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 HOXA5P20719 270 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 HTR2AP28223 471 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 CDX1P47902 265 aaPredicted RBP2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 KIR2DS1Q14954 304 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 MAJINQ3KP22 176 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 RNF212Q495C1 297 aa2.16□□□□□ -2.06
CCDC88A-205ENST00000426576 LRP10Q7Z4F1 713 aa2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms