RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 SYNGR2O43760 224 aa6.44□□□□□ -1.38
SYNE1-208ENST00000367256 BCL2P10415 239 aa6.44□□□□□ -1.38
SYNE1-208ENST00000367256 TTC32Q5I0X7 151 aa6.44□□□□□ -1.38
SYNE1-208ENST00000367256 GAPTQ8N292 157 aa6.44□□□□□ -1.38
SYNE1-208ENST00000367256 HIST1H4GQ99525 98 aa6.44□□□□□ -1.38
SYNE1-208ENST00000367256 SLC25A33Q9BSK2 321 aa6.44□□□□□ -1.38
SYNE1-208ENST00000367256 CACNA1BQ00975 2339 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 OR2W5A6NFC9 320 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 RAE1P78406 368 aaKnown RBP6.43□□□□□ -1.38
SYNE1-208ENST00000367256 IL11RAQ14626 422 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 UBALD2Q8IYN6 164 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 GVQW1Q8N7I0 195 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 LRRC75AQ8NAA5 344 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 ARRDC1-AS1Q9H2J1 176 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 A0A1W2PPC4 97 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 GALNSP34059 522 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 ZNF273Q14593 569 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 KIAA0040Q15053 153 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 WIPI1Q5MNZ9 446 aaPredicted RBP6.43□□□□□ -1.38
SYNE1-208ENST00000367256 CFAP161Q6P656 301 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 SAP30LQ9HAJ7 183 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 SLC6A13Q9NSD5 602 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 XIRP1Q702N8 1843 aaKnown RBP6.43□□□□□ -1.38
SYNE1-208ENST00000367256 ZNF32P17041 273 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 CDKN2AP42771 156 aaKnown RBP6.43□□□□□ -1.38
SYNE1-208ENST00000367256 LSM6P62312 80 aaKnown RBP6.43□□□□□ -1.38
SYNE1-208ENST00000367256 C17orf47Q8NEP4 570 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 UBTD1Q9HAC8 227 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 SRFP11831 508 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 OR8B12Q8NGG6 310 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 OR6X1Q8NH79 312 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 DMRT1Q9Y5R6 373 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 ACACAQ13085 2346 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 POLR2GP62487 172 aaKnown RBP eCLIP6.43□□□□□ -1.38
SYNE1-208ENST00000367256 ZNF880Q6PDB4 577 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 PHF7Q9BWX1 381 aaPredicted RBP6.43□□□□□ -1.38
SYNE1-208ENST00000367256 SPANXCQ9NY87 97 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 MPC1Q9Y5U8 109 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 CREBBPQ92793 2442 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 GAGE10A6NGK3 116 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 SNURFLB1AK76 121 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 CXCL3P19876 107 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 TM4SF4P48230 202 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 MRPS11P82912 194 aaKnown RBP6.43□□□□□ -1.38
SYNE1-208ENST00000367256 ANKRD37Q7Z713 158 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 HMGCLL1Q8TB92 370 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 MPTX1A8MV57 137 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 CD74P04233 296 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 CDX2Q99626 313 aaPredicted RBP6.43□□□□□ -1.38
SYNE1-208ENST00000367256 WDR13Q9H1Z4 485 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 GHITMQ9H3K2 345 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.43□□□□□ -1.38
SYNE1-208ENST00000367256 A0A1B0GTL3 188 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 RAB29O14966 203 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 ZNF250P15622 560 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 MVDP53602 400 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 CD300CQ08708 224 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 AURKAIP1Q9NWT8 199 aaPredicted RBP6.43□□□□□ -1.38
SYNE1-208ENST00000367256 CES1P1Q9UKY3 287 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 RAXQ9Y2V3 346 aa6.43□□□□□ -1.38
SYNE1-208ENST00000367256 HERPUD1Q15011 391 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 OR11H7Q8NGC8 314 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 PLXND1Q9Y4D7 1925 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 PQLC2LA1A4F0 135 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 DDTP30046 118 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 GUCD1Q96NT3 240 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 PLA2G10O15496 165 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 MPDU1O75352 247 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 HLA-DQA1P01909 254 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 CTLA4P16410 223 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 TMEM50BP56557 158 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 FAM209BQ5JX69 171 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 WDFY1Q8IWB7 410 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 CYB561D1Q8N8Q1 229 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 NUP37Q8NFH4 326 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 NRIP2Q9BQI9 281 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 METTL1Q9UBP6 276 aaKnown RBP6.42□□□□□ -1.38
SYNE1-208ENST00000367256 TAF1LQ8IZX4 1826 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 TMSB15BA0A087X1C1 80 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 SS18L1O75177 396 aaPredicted RBP6.42□□□□□ -1.38
SYNE1-208ENST00000367256 NUDT3O95989 172 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 MT-CO3P00414 261 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 VAX1Q5SQQ9 334 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 ADAMTS17Q8TE56 1095 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 FAM131CQ96AQ9 280 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 OR2V2Q96R30 315 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 SOSTQ9BQB4 213 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 CRISPLD2Q9H0B8 497 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 TRBV5-3A0A0A0MS03 114 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 CHST1O43916 411 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 KLRB1Q12918 225 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 SKP2Q13309 424 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 FAM53AQ6NSI3 398 aaPredicted RBP6.42□□□□□ -1.38
SYNE1-208ENST00000367256 RAB1CQ92928 201 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 SGK494Q96LW2 274 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 CHRNA10Q9GZZ6 450 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 KLK10O43240 276 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 CD3EP07766 207 aa6.42□□□□□ -1.38
SYNE1-208ENST00000367256 LGALS3P17931 250 aaKnown RBP6.42□□□□□ -1.38
SYNE1-208ENST00000367256 TM4SF20Q53R12 229 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms