RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 RNF224P0DH78 156 aa10.33□□□□□ -0.76
CLIP3-201ENST00000360535 DEFA4P12838 97 aa10.33□□□□□ -0.76
CLIP3-201ENST00000360535 ADIRFQ15847 76 aa10.33□□□□□ -0.76
CLIP3-201ENST00000360535 WDR25Q64LD2 544 aaPredicted RBP10.33□□□□□ -0.76
CLIP3-201ENST00000360535 ALKBH2Q6NS38 261 aa10.33□□□□□ -0.76
CLIP3-201ENST00000360535 PCSK4Q6UW60 755 aa10.33□□□□□ -0.76
CLIP3-201ENST00000360535 NUFIP2Q7Z417 695 aaKnown RBP10.33□□□□□ -0.76
CLIP3-201ENST00000360535 APH1AQ96BI3 265 aa10.33□□□□□ -0.76
CLIP3-201ENST00000360535 RPUSD4Q96CM3 377 aaKnown RBP10.33□□□□□ -0.76
CLIP3-201ENST00000360535 PRO1933Q9H354 126 aa10.33□□□□□ -0.76
CLIP3-201ENST00000360535 HIST1H2BKO60814 126 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 CLDN1O95832 211 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 HIST1H2BJP06899 126 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 HIST1H2BOP23527 126 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 HIST1H2BBP33778 126 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 HIST1H2BDP58876 126 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 HIST1H2BCP62807 126 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 IL24Q13007 206 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 HIST2H2BEQ16778 126 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.32□□□□□ -0.76
CLIP3-201ENST00000360535 ABHD17BQ5VST6 288 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 HIST1H2BHQ93079 126 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 HIST1H2BNQ99877 126 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 HIST1H2BMQ99879 126 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 DLL3Q9NYJ7 618 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 BOKQ9UMX3 212 aaPredicted RBP10.32□□□□□ -0.76
CLIP3-201ENST00000360535 HEATR1Q9H583 2144 aaKnown RBP10.32□□□□□ -0.76
CLIP3-201ENST00000360535 CADP27708 2225 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 H0Y980 276 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 PPP1R2P9O14990 202 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 DNPH1O43598 174 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 SYNGR2O43760 224 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 KRASP01116 189 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 HOXA5P20719 270 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 APLNRP35414 380 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 FOXO1Q12778 655 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 OR10V1Q8NGI7 309 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 OR5D13Q8NGL4 314 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 FAM210BQ96KR6 192 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 SNX22Q96L94 193 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 LOXL2Q9Y4K0 774 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 RNF115Q9Y4L5 304 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 HBE1P02100 147 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 CD55P08174 381 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 SOD3P08294 240 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 TRGC1P0CF51 173 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 DEFA6Q01524 100 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 ZNF816Q0VGE8 651 aaPredicted RBP10.32□□□□□ -0.76
CLIP3-201ENST00000360535 ZNF506Q5JVG8 444 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 RBMXL1Q96E39 390 aaKnown RBP10.32□□□□□ -0.76
CLIP3-201ENST00000360535 DEFB127Q9H1M4 99 aa10.32□□□□□ -0.76
CLIP3-201ENST00000360535 DFFBO76075 338 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 HSPB1P04792 205 aaKnown RBP10.31□□□□□ -0.76
CLIP3-201ENST00000360535 PGA5P0DJD9 388 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 LMO1P25800 156 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 CEACAM6P40199 344 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 GFRA1P56159 465 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 ERVS71-1P61550 626 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 ZFP36L1Q07352 338 aaKnown RBP10.31□□□□□ -0.76
CLIP3-201ENST00000360535 BAXQ07812 192 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 LTC4SQ16873 150 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 C6orf15Q6UXA7 325 aaPredicted RBP10.31□□□□□ -0.76
CLIP3-201ENST00000360535 FRZBQ92765 325 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 SPSB4Q96A44 273 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 TECTBQ96PL2 329 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 BTBD17A6NE02 478 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 CDX1P47902 265 aaPredicted RBP10.31□□□□□ -0.76
CLIP3-201ENST00000360535 PMP22Q01453 160 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 OR2M7Q8NG81 312 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 SLC25A22Q9H936 323 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 GAB2Q9UQC2 676 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 CDIPTO14735 213 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 IGKV1-39P01597 117 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 IGKV1D-39P04432 117 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 CTXN2P0C2S0 81 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 GLIPR1P48060 266 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 DUSP3P51452 185 aaPredicted RBP10.31□□□□□ -0.76
CLIP3-201ENST00000360535 LINC00205P59089 165 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 KRTAP27-1Q3LI81 207 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 ZNF324BQ6AW86 544 aaPredicted RBP10.31□□□□□ -0.76
CLIP3-201ENST00000360535 OR4C12Q96R67 309 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 CABLES2Q9BTV7 478 aa10.31□□□□□ -0.76
CLIP3-201ENST00000360535 AURKAIP1Q9NWT8 199 aaPredicted RBP10.31□□□□□ -0.76
CLIP3-201ENST00000360535 LOC102723971A0A1B0GUV8 181 aa10.3□□□□□ -0.76
CLIP3-201ENST00000360535 IGHV2-70P01814 119 aa10.3□□□□□ -0.76
CLIP3-201ENST00000360535 CLN3Q13286 438 aa10.3□□□□□ -0.76
CLIP3-201ENST00000360535 ZNF726P1Q15940 193 aa10.3□□□□□ -0.76
CLIP3-201ENST00000360535 KDF1Q8NAX2 398 aaPredicted RBP10.3□□□□□ -0.76
CLIP3-201ENST00000360535 LHX4Q969G2 390 aa10.3□□□□□ -0.76
CLIP3-201ENST00000360535 RCC1LQ96I51 464 aaKnown RBP10.3□□□□□ -0.76
CLIP3-201ENST00000360535 RBKSQ9H477 322 aa10.3□□□□□ -0.76
CLIP3-201ENST00000360535 SLC39A9Q9NUM3 307 aa10.3□□□□□ -0.76
CLIP3-201ENST00000360535 KIAA1324LA8MWY0 1029 aaPredicted RBP10.3□□□□□ -0.76
CLIP3-201ENST00000360535 NTN3O00634 580 aaPredicted RBP10.3□□□□□ -0.76
CLIP3-201ENST00000360535 MT-CO3P00414 261 aa10.3□□□□□ -0.76
CLIP3-201ENST00000360535 PMELP40967 661 aa10.3□□□□□ -0.76
CLIP3-201ENST00000360535 WNT5AP41221 380 aa10.3□□□□□ -0.76
CLIP3-201ENST00000360535 GNG3P63215 75 aa10.3□□□□□ -0.76
CLIP3-201ENST00000360535 KHDC3LQ587J8 217 aa10.3□□□□□ -0.76
CLIP3-201ENST00000360535 BTNL3Q6UXE8 466 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms