RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 CLN8Q9UBY8 286 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 TNCP24821 2201 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 RBFOX3A6NFN3 312 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 H3BQ15 152 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 TMEM187Q14656 261 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 OR8G1Q15617 311 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 TXN2Q99757 166 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 A0A0U1RQV5 110 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 NUDT19A8MXV4 375 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 DLK1P80370 383 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 ZNF385CQ66K41 422 aaPredicted RBP10.25□□□□□ -0.77
USP1-201ENST00000339950 RTL6Q6ICC9 239 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 MRPL14Q6P1L8 145 aaKnown RBP10.25□□□□□ -0.77
USP1-201ENST00000339950 PPP1R32Q7Z5V6 425 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 BAGE3Q86Y29 109 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 BAGE2Q86Y30 109 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 PLEKHF2Q9H8W4 249 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 KIR2DS1A0A191URI9 304 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 FGF16O43320 207 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 CHRNA7P36544 502 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 KIR2DS4P43632 304 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 SPEM2Q0P670 501 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 MRPL49Q13405 166 aaKnown RBP10.24□□□□□ -0.77
USP1-201ENST00000339950 KIR2DS1Q14954 304 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 DHRS7BQ6IAN0 325 aaPredicted RBP10.24□□□□□ -0.77
USP1-201ENST00000339950 MDP1Q86V88 176 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 TMEM251Q8N6I4 163 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 IL22RA2Q969J5 263 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 NABP1Q96AH0 204 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 MTCH1Q9NZJ7 389 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 PSG11Q9UQ72 335 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 TGIF2-C20orf24A0A0A6YYL0 155 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 H0Y8G0 127 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 DFFBO76075 338 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 OR2D2Q9H210 308 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 HEYLQ9NQ87 328 aaPredicted RBP10.24□□□□□ -0.77
USP1-201ENST00000339950 PILRBQ9UKJ0 227 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 CBY3A6NI87 242 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 MST1LQ2TV78 715 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 IMMP1LQ96LU5 166 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 CACFD1Q9UGQ2 172 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 IGHV3OR15-7A0A075B7D8 119 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 SLC22A20A6NK97 555 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 OR5H1A6NKK0 313 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 AQP7O14520 342 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 SYNGR3O43761 229 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 MT-CO3P00414 261 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 CD46P15529 392 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 RND3P61587 244 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 Q0VFX4 171 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 VKORC1L1Q8N0U8 176 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 APOBEC3DQ96AK3 386 aaPredicted RBP10.24□□□□□ -0.77
USP1-201ENST00000339950 ELOVL1Q9BW60 279 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 TMED3Q9Y3Q3 217 aa10.24□□□□□ -0.77
USP1-201ENST00000339950 MUC6Q6W4X9 2439 aa10.23□□□□□ -0.77
USP1-201ENST00000339950 MED12LQ86YW9 2145 aa10.23□□□□□ -0.77
USP1-201ENST00000339950 TGIF2LXQ8IUE1 241 aa10.23□□□□□ -0.77
USP1-201ENST00000339950 C1orf210Q8IVY1 113 aa10.23□□□□□ -0.77
USP1-201ENST00000339950 OR2M7Q8NG81 312 aa10.23□□□□□ -0.77
USP1-201ENST00000339950 OR52L2PQ8NGH6 319 aa10.23□□□□□ -0.77
USP1-201ENST00000339950 ACTL6BO94805 426 aa10.23□□□□□ -0.77
USP1-201ENST00000339950 CD55P08174 381 aa10.23□□□□□ -0.77
USP1-201ENST00000339950 HLA-GP17693 338 aa10.23□□□□□ -0.77
USP1-201ENST00000339950 GCH1P30793 250 aa10.23□□□□□ -0.77
USP1-201ENST00000339950 XKRY2A2RUG3 117 aa10.23□□□□□ -0.77
USP1-201ENST00000339950 NTF3P20783 257 aa10.23□□□□□ -0.77
USP1-201ENST00000339950 P2RY1P47900 373 aa10.23□□□□□ -0.77
USP1-201ENST00000339950 SRSF6Q13247 344 aaKnown RBP10.23□□□□□ -0.77
USP1-201ENST00000339950 TOMM20LQ6UXN7 152 aa10.23□□□□□ -0.77
USP1-201ENST00000339950 PARP11Q9NR21 331 aa10.23□□□□□ -0.77
USP1-201ENST00000339950 V9GYS6 101 aa10.23□□□□□ -0.77
USP1-201ENST00000339950 LOC400499M0QZD8 3231 aa10.22□□□□□ -0.77
USP1-201ENST00000339950 ST8SIA5O15466 376 aa10.22□□□□□ -0.77
USP1-201ENST00000339950 CST2P09228 141 aa10.22□□□□□ -0.77
USP1-201ENST00000339950 SOX8P57073 446 aa10.22□□□□□ -0.77
USP1-201ENST00000339950 GNG3P63215 75 aa10.22□□□□□ -0.77
USP1-201ENST00000339950 TTTY12Q9BZ98 90 aa10.22□□□□□ -0.77
USP1-201ENST00000339950 A0A1W2PPV4 95 aa10.22□□□□□ -0.77
USP1-201ENST00000339950 DBX1A6NMT0 343 aa10.22□□□□□ -0.77
USP1-201ENST00000339950 SPRY3O43610 288 aa10.22□□□□□ -0.77
USP1-201ENST00000339950 FGF7P21781 194 aa10.22□□□□□ -0.77
USP1-201ENST00000339950 FAM201AQ5SY85 155 aa10.22□□□□□ -0.77
USP1-201ENST00000339950 OR1L1Q8NH94 360 aa10.22□□□□□ -0.77
USP1-201ENST00000339950 GPR146Q96CH1 333 aa10.22□□□□□ -0.77
USP1-201ENST00000339950 RPH3ALQ9UNE2 315 aa10.22□□□□□ -0.77
USP1-201ENST00000339950 CARHSP1Q9Y2V2 147 aaKnown RBP10.22□□□□□ -0.77
USP1-201ENST00000339950 PLXNB1O43157 2135 aa10.22□□□□□ -0.77
USP1-201ENST00000339950 IGLV3-12A0A075B6K2 115 aa10.22□□□□□ -0.77
USP1-201ENST00000339950 TRDCB7Z8K6 153 aa10.22□□□□□ -0.77
USP1-201ENST00000339950 APELAP0DMC3 54 aa10.22□□□□□ -0.77
USP1-201ENST00000339950 HABP2Q14520 560 aaPredicted RBP10.22□□□□□ -0.77
USP1-201ENST00000339950 KCNE4Q8WWG9 221 aa10.22□□□□□ -0.77
USP1-201ENST00000339950 OIT3Q8WWZ8 545 aa10.22□□□□□ -0.77
USP1-201ENST00000339950 VSIRQ9H7M9 311 aa10.22□□□□□ -0.77
USP1-201ENST00000339950 PLA2G2EQ9NZK7 142 aa10.22□□□□□ -0.77
USP1-201ENST00000339950 CACNA1AO00555 2505 aa10.22□□□□□ -0.77
USP1-201ENST00000339950 NKX2-8O15522 239 aa10.21□□□□□ -0.77
USP1-201ENST00000339950 DDTP30046 118 aa10.21□□□□□ -0.77
USP1-201ENST00000339950 SNCAP37840 140 aa10.21□□□□□ -0.77
USP1-201ENST00000339950 STARD6P59095 220 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms