RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 SERPINE3A8MV23 424 aa13.58□□□□□ -0.24
SHOX-201ENST00000334060 GSTP1P09211 210 aaKnown RBP13.58□□□□□ -0.24
SHOX-201ENST00000334060 IGHV4-31P0DP07 118 aa13.58□□□□□ -0.24
SHOX-201ENST00000334060 PRSS3P35030 304 aa13.58□□□□□ -0.24
SHOX-201ENST00000334060 GNMTQ14749 295 aa13.58□□□□□ -0.24
SHOX-201ENST00000334060 IGSF11Q5DX21 431 aa13.58□□□□□ -0.24
SHOX-201ENST00000334060 PRAMEF5Q5TYX0 476 aa13.58□□□□□ -0.24
SHOX-201ENST00000334060 SLC35E4Q6ICL7 350 aa13.58□□□□□ -0.24
SHOX-201ENST00000334060 PDZD9Q8IXQ8 264 aa13.58□□□□□ -0.24
SHOX-201ENST00000334060 UPRTQ96BW1 309 aa13.58□□□□□ -0.24
SHOX-201ENST00000334060 NUDT16L1Q9BRJ7 211 aaKnown RBP13.58□□□□□ -0.24
SHOX-201ENST00000334060 TRAPPC2LQ9UL33 140 aa13.58□□□□□ -0.24
SHOX-201ENST00000334060 NUBP2Q9Y5Y2 271 aa13.58□□□□□ -0.24
SHOX-201ENST00000334060 A0A0A6YYH2 397 aa13.57□□□□□ -0.24
SHOX-201ENST00000334060 TMEM30CPA0ZSE6 113 aa13.57□□□□□ -0.24
SHOX-201ENST00000334060 A6NJ64 397 aa13.57□□□□□ -0.24
SHOX-201ENST00000334060 C15orf65H3BRN8 121 aa13.57□□□□□ -0.24
SHOX-201ENST00000334060 CGB3P0DN86 165 aa13.57□□□□□ -0.24
SHOX-201ENST00000334060 CGB7P0DN87 165 aa13.57□□□□□ -0.24
SHOX-201ENST00000334060 DLX6P56179 175 aa13.57□□□□□ -0.24
SHOX-201ENST00000334060 ARF6P62330 175 aa13.57□□□□□ -0.24
SHOX-201ENST00000334060 KRTAP1-1Q07627 177 aa13.57□□□□□ -0.24
SHOX-201ENST00000334060 TMEM249Q2WGJ8 235 aa13.57□□□□□ -0.24
SHOX-201ENST00000334060 Q8N7P7 452 aa13.57□□□□□ -0.24
SHOX-201ENST00000334060 Q9N2K0 584 aa13.57□□□□□ -0.24
SHOX-201ENST00000334060 LOC105371242A0A075B767 164 aa13.56□□□□□ -0.24
SHOX-201ENST00000334060 RPS10-NUDT3A0A1W2PQS6 291 aa13.56□□□□□ -0.24
SHOX-201ENST00000334060 AVPP01185 164 aa13.56□□□□□ -0.24
SHOX-201ENST00000334060 LOXL1Q08397 574 aaPredicted RBP13.56□□□□□ -0.24
SHOX-201ENST00000334060 RBM39Q14498 530 aaKnown RBP13.56□□□□□ -0.24
SHOX-201ENST00000334060 PYHIN1Q6K0P9 492 aa13.56□□□□□ -0.24
SHOX-201ENST00000334060 ZNF880Q6PDB4 577 aa13.56□□□□□ -0.24
SHOX-201ENST00000334060 LURAP1LQ8IV03 231 aa13.56□□□□□ -0.24
SHOX-201ENST00000334060 SMIM4Q8WVI0 70 aa13.56□□□□□ -0.24
SHOX-201ENST00000334060 KIRREL1Q96J84 757 aa13.56□□□□□ -0.24
SHOX-201ENST00000334060 HEXA-AS1Q9H8Q6 139 aa13.56□□□□□ -0.24
SHOX-201ENST00000334060 TAF9BQ9HBM6 251 aa13.56□□□□□ -0.24
SHOX-201ENST00000334060 MBNL3Q9NUK0 354 aaKnown RBP13.56□□□□□ -0.24
SHOX-201ENST00000334060 OR1A1Q9P1Q5 309 aa13.56□□□□□ -0.24
SHOX-201ENST00000334060 SCP2D1Q9UJQ7 156 aa13.56□□□□□ -0.24
SHOX-201ENST00000334060 SONP18583 2426 aaKnown RBP13.56□□□□□ -0.24
SHOX-201ENST00000334060 PPIAL4CA0A0B4J2A2 164 aa13.56□□□□□ -0.24
SHOX-201ENST00000334060 PPIAL4GP0DN37 164 aa13.56□□□□□ -0.24
SHOX-201ENST00000334060 ZNF16P17020 682 aaPredicted RBP13.56□□□□□ -0.24
SHOX-201ENST00000334060 KLRD1Q13241 179 aa13.56□□□□□ -0.24
SHOX-201ENST00000334060 LY6G5BQ8NDX9 201 aa13.56□□□□□ -0.24
SHOX-201ENST00000334060 TMPRSS13Q9BYE2 586 aa13.56□□□□□ -0.24
SHOX-201ENST00000334060 SIRT7Q9NRC8 400 aa13.56□□□□□ -0.24
SHOX-201ENST00000334060 ONECUT1Q9UBC0 465 aa13.56□□□□□ -0.24
SHOX-201ENST00000334060 A0A1W2PPE3 182 aa13.55□□□□□ -0.24
SHOX-201ENST00000334060 M0QYG6 137 aa13.55□□□□□ -0.24
SHOX-201ENST00000334060 SDCBPO00560 298 aaPredicted RBP13.55□□□□□ -0.24
SHOX-201ENST00000334060 PAX6P26367 422 aa13.55□□□□□ -0.24
SHOX-201ENST00000334060 OVCH2Q7RTZ1 564 aa13.55□□□□□ -0.24
SHOX-201ENST00000334060 LDLRAD3Q86YD5 345 aa13.55□□□□□ -0.24
SHOX-201ENST00000334060 PNKDQ8N490 385 aa13.55□□□□□ -0.24
SHOX-201ENST00000334060 OR52L2PQ8NGH6 319 aa13.55□□□□□ -0.24
SHOX-201ENST00000334060 OR10V1Q8NGI7 309 aa13.55□□□□□ -0.24
SHOX-201ENST00000334060 OR5D13Q8NGL4 314 aa13.55□□□□□ -0.24
SHOX-201ENST00000334060 IL1F10Q8WWZ1 152 aa13.55□□□□□ -0.24
SHOX-201ENST00000334060 DPAGT1Q9H3H5 408 aa13.55□□□□□ -0.24
SHOX-201ENST00000334060 A8MXK9 166 aa13.54□□□□□ -0.24
SHOX-201ENST00000334060 TSC22D2O75157 780 aa13.54□□□□□ -0.24
SHOX-201ENST00000334060 HBZP02008 142 aa13.54□□□□□ -0.24
SHOX-201ENST00000334060 PMP2P02689 132 aa13.54□□□□□ -0.24
SHOX-201ENST00000334060 LPLP06858 475 aa13.54□□□□□ -0.24
SHOX-201ENST00000334060 PNLIPRP3Q17RR3 467 aa13.54□□□□□ -0.24
SHOX-201ENST00000334060 PLA1AQ53H76 456 aa13.54□□□□□ -0.24
SHOX-201ENST00000334060 UXS1Q8NBZ7 420 aa13.54□□□□□ -0.24
SHOX-201ENST00000334060 BEST4Q8NFU0 473 aa13.54□□□□□ -0.24
SHOX-201ENST00000334060 RAB39BQ96DA2 213 aa13.54□□□□□ -0.24
SHOX-201ENST00000334060 THAP7Q9BT49 309 aaPredicted RBP13.54□□□□□ -0.24
SHOX-201ENST00000334060 GHITMQ9H3K2 345 aa13.54□□□□□ -0.24
SHOX-201ENST00000334060 CALYQ9NYX4 217 aa13.54□□□□□ -0.24
SHOX-201ENST00000334060 SOX21Q9Y651 276 aaPredicted RBP13.54□□□□□ -0.24
SHOX-201ENST00000334060 IGHV3OR16-10A0A075B7F0 116 aa13.54□□□□□ -0.24
SHOX-201ENST00000334060 IGHV2-70DA0A0C4DH43 119 aa13.54□□□□□ -0.24
SHOX-201ENST00000334060 SCGNO76038 276 aa13.54□□□□□ -0.24
SHOX-201ENST00000334060 GLAP06280 429 aa13.54□□□□□ -0.24
SHOX-201ENST00000334060 PAX5Q02548 391 aa13.54□□□□□ -0.24
SHOX-201ENST00000334060 ZNF57Q68EA5 555 aaPredicted RBP13.54□□□□□ -0.24
SHOX-201ENST00000334060 C1orf229Q6ZS94 237 aaPredicted RBP13.54□□□□□ -0.24
SHOX-201ENST00000334060 PPP1R35Q8TAP8 253 aa13.54□□□□□ -0.24
SHOX-201ENST00000334060 ARL11Q969Q4 196 aa13.54□□□□□ -0.24
SHOX-201ENST00000334060 POM121Q96HA1 1249 aa13.54□□□□□ -0.24
SHOX-201ENST00000334060 TINAGL1Q9GZM7 467 aaPredicted RBP13.54□□□□□ -0.24
SHOX-201ENST00000334060 ANAPC10Q9UM13 185 aa13.54□□□□□ -0.24
SHOX-201ENST00000334060 A0A1W2PRD5 423 aa13.53□□□□□ -0.24
SHOX-201ENST00000334060 A0A1W2PRF3 423 aa13.53□□□□□ -0.24
SHOX-201ENST00000334060 A0A1W2PRM7 423 aa13.53□□□□□ -0.24
SHOX-201ENST00000334060 GABARAPH6UMI1 98 aa13.53□□□□□ -0.24
SHOX-201ENST00000334060 TSPAN4O14817 238 aa13.53□□□□□ -0.24
SHOX-201ENST00000334060 CD3DP04234 171 aa13.53□□□□□ -0.24
SHOX-201ENST00000334060 MSMBP08118 114 aa13.53□□□□□ -0.24
SHOX-201ENST00000334060 NUP62P37198 522 aaPredicted RBP13.53□□□□□ -0.24
SHOX-201ENST00000334060 CBX5P45973 191 aa13.53□□□□□ -0.24
SHOX-201ENST00000334060 EXOSC2Q13868 293 aaKnown RBP13.53□□□□□ -0.24
SHOX-201ENST00000334060 HMGN3Q15651 99 aa13.53□□□□□ -0.24
SHOX-201ENST00000334060 HOGA1Q86XE5 327 aa13.53□□□□□ -0.24
SHOX-201ENST00000334060 OCSTAMPQ9BR26 566 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms