RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 LY75O60449 1722 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 SIPA1L1O43166 1804 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 IGLV3-16A0A075B6K0 115 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 CCDC144NLQ6NUI1 221 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 STPG3Q8N7X2 389 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 GALNT14Q96FL9 552 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 ETHE1O95571 254 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 GLIPR1P48060 266 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 ZXDAP98168 799 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 ZNF250P15622 560 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 LRRC75AQ8NAA5 344 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 PPIL1Q9Y3C6 166 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 A0A1W2PNR3 127 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 MUC1P15941 1255 aaPredicted RBP12.58□□□□□ -0.4
COL7A1-201ENST00000328333 GAB4Q2WGN9 574 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 ARHGAP21Q5T5U3 1957 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 PLXND1Q9Y4D7 1925 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 K7ESM1 405 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 EIF3GO75821 320 aaKnown RBP eCLIP12.58□□□□□ -0.4
COL7A1-201ENST00000328333 DAOP14920 347 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 ANKRD37Q7Z713 158 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 SF3B5Q9BWJ5 86 aaKnown RBP12.58□□□□□ -0.4
COL7A1-201ENST00000328333 LTB4R2Q9NPC1 389 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 JKAMPQ9P055 326 aa12.58□□□□□ -0.4
COL7A1-201ENST00000328333 TMEM50BP56557 158 aa12.57□□□□□ -0.4
COL7A1-201ENST00000328333 C19orf54Q5BKX5 351 aa12.57□□□□□ -0.4
COL7A1-201ENST00000328333 TGIF2LYQ8IUE0 185 aa12.57□□□□□ -0.4
COL7A1-201ENST00000328333 MOB4Q9Y3A3 225 aa12.57□□□□□ -0.4
COL7A1-201ENST00000328333 LMO7DNF2Z398 122 aa12.57□□□□□ -0.4
COL7A1-201ENST00000328333 CXXC4Q9H2H0 198 aa12.57□□□□□ -0.4
COL7A1-201ENST00000328333 GALNSP34059 522 aa12.57□□□□□ -0.4
COL7A1-201ENST00000328333 FOXF1Q12946 379 aa12.57□□□□□ -0.4
COL7A1-201ENST00000328333 ZMIZ1Q9ULJ6 1067 aa12.57□□□□□ -0.4
COL7A1-201ENST00000328333 HIGD1AQ9Y241 93 aa12.57□□□□□ -0.4
COL7A1-201ENST00000328333 HCFC2Q9Y5Z7 792 aa12.57□□□□□ -0.4
COL7A1-201ENST00000328333 PLPP3O14495 311 aa12.57□□□□□ -0.4
COL7A1-201ENST00000328333 RAB29O14966 203 aa12.57□□□□□ -0.4
COL7A1-201ENST00000328333 LGALS3P17931 250 aaKnown RBP12.57□□□□□ -0.4
COL7A1-201ENST00000328333 CD300CQ08708 224 aa12.57□□□□□ -0.4
COL7A1-201ENST00000328333 QTRT1Q9BXR0 403 aaKnown RBP12.57□□□□□ -0.4
COL7A1-201ENST00000328333 IGF2P01344 180 aa12.57□□□□□ -0.4
COL7A1-201ENST00000328333 CD1BP29016 333 aa12.57□□□□□ -0.4
COL7A1-201ENST00000328333 RELQ04864 619 aaPredicted RBP12.57□□□□□ -0.4
COL7A1-201ENST00000328333 WDR31Q8NA23 367 aa12.57□□□□□ -0.4
COL7A1-201ENST00000328333 ZNF519Q8TB69 540 aa12.57□□□□□ -0.4
COL7A1-201ENST00000328333 SIT1Q9Y3P8 196 aa12.57□□□□□ -0.4
COL7A1-201ENST00000328333 BATF2Q8N1L9 274 aa12.57□□□□□ -0.4
COL7A1-201ENST00000328333 PAXXQ9BUH6 204 aa12.57□□□□□ -0.4
COL7A1-201ENST00000328333 ZNF735P0CB33 412 aa12.57□□□□□ -0.4
COL7A1-201ENST00000328333 ASB10Q8WXI3 467 aa12.57□□□□□ -0.4
COL7A1-201ENST00000328333 VSIG4Q9Y279 399 aa12.57□□□□□ -0.4
COL7A1-201ENST00000328333 KBTBD11O94819 623 aa12.56□□□□□ -0.4
COL7A1-201ENST00000328333 GABRG2P18507 467 aa12.56□□□□□ -0.4
COL7A1-201ENST00000328333 TMEM108Q6UXF1 575 aa12.56□□□□□ -0.4
COL7A1-201ENST00000328333 ALG14Q96F25 216 aa12.56□□□□□ -0.4
COL7A1-201ENST00000328333 PPP2CBP62714 309 aa12.56□□□□□ -0.4
COL7A1-201ENST00000328333 IRF3Q14653 427 aa12.56□□□□□ -0.4
COL7A1-201ENST00000328333 SYNGR1O43759 233 aa12.56□□□□□ -0.4
COL7A1-201ENST00000328333 MAS1LP35410 378 aa12.56□□□□□ -0.4
COL7A1-201ENST00000328333 TMEM222Q9H0R3 208 aa12.56□□□□□ -0.4
COL7A1-201ENST00000328333 ANKRD10Q9NXR5 420 aa12.56□□□□□ -0.4
COL7A1-201ENST00000328333 PAPPA2Q9BXP8 1791 aa12.56□□□□□ -0.4
COL7A1-201ENST00000328333 LRP5O75197 1615 aa12.56□□□□□ -0.4
COL7A1-201ENST00000328333 ZNF77Q15935 545 aa12.56□□□□□ -0.4
COL7A1-201ENST00000328333 RAB1BQ9H0U4 201 aa12.56□□□□□ -0.4
COL7A1-201ENST00000328333 TMEM140Q9NV12 185 aa12.56□□□□□ -0.4
COL7A1-201ENST00000328333 AGAP20933 346 aa12.56□□□□□ -0.4
COL7A1-201ENST00000328333 C10orf128Q5T292 105 aa12.56□□□□□ -0.4
COL7A1-201ENST00000328333 ZDHHC16Q969W1 377 aa12.56□□□□□ -0.4
COL7A1-201ENST00000328333 PAGE4O60829 102 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 FSTP19883 344 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 SKP2Q13309 424 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 ZBP1Q9H171 429 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 FGF22Q9HCT0 170 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 MRAP2Q96G30 205 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 ASB1Q9Y576 335 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 PLXNA2O75051 1894 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 TRGC2P03986 189 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 HOGA1Q86XE5 327 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 GAPTQ8N292 157 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 OR10S1Q8NGN2 331 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 SLC25A40Q8TBP6 338 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 NPVFQ9HCQ7 196 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 HINT1P49773 126 aaPredicted RBP12.55□□□□□ -0.4
COL7A1-201ENST00000328333 MEF2CQ06413 473 aaPredicted RBP12.55□□□□□ -0.4
COL7A1-201ENST00000328333 A0A0U1RQV5 110 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 HES3Q5TGS1 186 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 WFDC8Q8IUA0 241 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 PSMG3Q9BT73 122 aaPredicted RBP12.55□□□□□ -0.4
COL7A1-201ENST00000328333 GHITMQ9H3K2 345 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 ASPDHA6ND91 283 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 TP53I13Q8NBR0 393 aaPredicted RBP12.55□□□□□ -0.4
COL7A1-201ENST00000328333 SCNM1Q9BWG6 230 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 MALRD1Q5VYJ5 2156 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 TICRRQ7Z2Z1 1910 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 CA7P43166 264 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 ATP6V0CP27449 155 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 OR4X1Q8NH49 305 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 KIR2DL4Q99706 377 aa12.55□□□□□ -0.4
COL7A1-201ENST00000328333 MRM2Q9UI43 246 aaKnown RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms