RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 WIPI2Q9Y4P8 454 aa13.05□□□□□ -0.32
LSM6-201ENST00000296581 ACACBO00763 2458 aa13.05□□□□□ -0.32
LSM6-201ENST00000296581 DIDO1Q9BTC0 2240 aaKnown RBP13.05□□□□□ -0.32
LSM6-201ENST00000296581 IGKV1-6A0A0C4DH72 117 aa13.05□□□□□ -0.32
LSM6-201ENST00000296581 C17orf100A8MU93 164 aa13.05□□□□□ -0.32
LSM6-201ENST00000296581 ZNF205O95201 554 aa13.05□□□□□ -0.32
LSM6-201ENST00000296581 SFT2D2O95562 160 aa13.05□□□□□ -0.32
LSM6-201ENST00000296581 RCC1P18754 421 aaPredicted RBP13.05□□□□□ -0.32
LSM6-201ENST00000296581 VAMP1P23763 118 aa13.05□□□□□ -0.32
LSM6-201ENST00000296581 SERPINF1P36955 418 aa13.05□□□□□ -0.32
LSM6-201ENST00000296581 UCP3P55916 312 aa13.05□□□□□ -0.32
LSM6-201ENST00000296581 ATXN7L3Q14CW9 347 aaPredicted RBP13.05□□□□□ -0.32
LSM6-201ENST00000296581 C5orf24Q7Z6I8 188 aa13.05□□□□□ -0.32
LSM6-201ENST00000296581 OR4A4PQ8NGN8 299 aa13.05□□□□□ -0.32
LSM6-201ENST00000296581 Q8TCH9 128 aa13.05□□□□□ -0.32
LSM6-201ENST00000296581 SPOCK3Q9BQ16 436 aa13.05□□□□□ -0.32
LSM6-201ENST00000296581 GCM1Q9NP62 436 aa13.05□□□□□ -0.32
LSM6-201ENST00000296581 MBNL3Q9NUK0 354 aaKnown RBP13.05□□□□□ -0.32
LSM6-201ENST00000296581 HCFC1P51610 2035 aa13.04□□□□□ -0.32
LSM6-201ENST00000296581 GOSR2O14653 212 aa13.04□□□□□ -0.32
LSM6-201ENST00000296581 RPS2P15880 293 aaKnown RBP13.04□□□□□ -0.32
LSM6-201ENST00000296581 H2BFSP57053 126 aa13.04□□□□□ -0.32
LSM6-201ENST00000296581 SUPT4H1P63272 117 aaKnown RBP13.04□□□□□ -0.32
LSM6-201ENST00000296581 BEX5Q5H9J7 111 aa13.04□□□□□ -0.32
LSM6-201ENST00000296581 SSX9Q7RTT3 188 aa13.04□□□□□ -0.32
LSM6-201ENST00000296581 CD177Q8N6Q3 437 aa13.04□□□□□ -0.32
LSM6-201ENST00000296581 PHB2Q99623 299 aa13.04□□□□□ -0.32
LSM6-201ENST00000296581 CABLES2Q9BTV7 478 aa13.04□□□□□ -0.32
LSM6-201ENST00000296581 LY86O95711 162 aa13.04□□□□□ -0.32
LSM6-201ENST00000296581 TK1P04183 234 aa13.04□□□□□ -0.32
LSM6-201ENST00000296581 ZNF728P0DKX0 622 aa13.04□□□□□ -0.32
LSM6-201ENST00000296581 PSG2P11465 335 aa13.04□□□□□ -0.32
LSM6-201ENST00000296581 HLA-GP17693 338 aa13.04□□□□□ -0.32
LSM6-201ENST00000296581 AADACP22760 399 aa13.04□□□□□ -0.32
LSM6-201ENST00000296581 RBMXP38159 391 aaKnown RBP13.04□□□□□ -0.32
LSM6-201ENST00000296581 SPCS3P61009 180 aa13.04□□□□□ -0.32
LSM6-201ENST00000296581 COL10A1Q03692 680 aa13.04□□□□□ -0.32
LSM6-201ENST00000296581 SMCO1Q147U7 214 aa13.04□□□□□ -0.32
LSM6-201ENST00000296581 C4orf17Q53FE4 359 aa13.04□□□□□ -0.32
LSM6-201ENST00000296581 SLC35E4Q6ICL7 350 aa13.04□□□□□ -0.32
LSM6-201ENST00000296581 THAP6Q8TBB0 222 aa13.04□□□□□ -0.32
LSM6-201ENST00000296581 ASB13Q8WXK3 278 aa13.04□□□□□ -0.32
LSM6-201ENST00000296581 RNF7Q9UBF6 113 aa13.04□□□□□ -0.32
LSM6-201ENST00000296581 IGKV1D-17A0A075B6S4 117 aa13.03□□□□□ -0.32
LSM6-201ENST00000296581 HMSDA8MTL9 139 aa13.03□□□□□ -0.32
LSM6-201ENST00000296581 SLC31A2O15432 143 aa13.03□□□□□ -0.32
LSM6-201ENST00000296581 SIAH2O43255 324 aa13.03□□□□□ -0.32
LSM6-201ENST00000296581 TUSC2O75896 110 aa13.03□□□□□ -0.32
LSM6-201ENST00000296581 PPYP01298 95 aa13.03□□□□□ -0.32
LSM6-201ENST00000296581 PRDX2P32119 198 aa13.03□□□□□ -0.32
LSM6-201ENST00000296581 OR3A1P47881 315 aa13.03□□□□□ -0.32
LSM6-201ENST00000296581 PAX5Q02548 391 aa13.03□□□□□ -0.32
LSM6-201ENST00000296581 TLE1Q04724 770 aa13.03□□□□□ -0.32
LSM6-201ENST00000296581 LY6G6FQ5SQ64 297 aa13.03□□□□□ -0.32
LSM6-201ENST00000296581 CLEC18BQ6UXF7 455 aa13.03□□□□□ -0.32
LSM6-201ENST00000296581 FAM222BQ8WU58 562 aa13.03□□□□□ -0.32
LSM6-201ENST00000296581 NEUROG1Q92886 237 aa13.03□□□□□ -0.32
LSM6-201ENST00000296581 WDR89Q96FK6 387 aaPredicted RBP13.03□□□□□ -0.32
LSM6-201ENST00000296581 METRNQ9UJH8 293 aa13.03□□□□□ -0.32
LSM6-201ENST00000296581 PCDHB10Q9UN67 800 aa13.03□□□□□ -0.32
LSM6-201ENST00000296581 RNF115Q9Y4L5 304 aa13.03□□□□□ -0.32
LSM6-201ENST00000296581 NBEAQ8NFP9 2946 aa13.03□□□□□ -0.32
LSM6-201ENST00000296581 CACNA1DQ01668 2161 aa13.03□□□□□ -0.32
LSM6-201ENST00000296581 A0A0B4J2A0 478 aa13.02□□□□□ -0.32
LSM6-201ENST00000296581 TMEM30CPA0ZSE6 113 aa13.02□□□□□ -0.32
LSM6-201ENST00000296581 TMEM218A2RU14 115 aa13.02□□□□□ -0.32
LSM6-201ENST00000296581 TXNL1O43396 289 aa13.02□□□□□ -0.32
LSM6-201ENST00000296581 SPDEFO95238 335 aa13.02□□□□□ -0.32
LSM6-201ENST00000296581 TAS2R60P59551 318 aa13.02□□□□□ -0.32
LSM6-201ENST00000296581 EFNB3Q15768 340 aa13.02□□□□□ -0.32
LSM6-201ENST00000296581 DCAF12L2Q5VW00 463 aa13.02□□□□□ -0.32
LSM6-201ENST00000296581 LPCAT3Q6P1A2 487 aa13.02□□□□□ -0.32
LSM6-201ENST00000296581 UQCC3Q6UW78 93 aa13.02□□□□□ -0.32
LSM6-201ENST00000296581 OR5M8Q8NGP6 311 aa13.02□□□□□ -0.32
LSM6-201ENST00000296581 CASTOR1Q8WTX7 329 aa13.02□□□□□ -0.32
LSM6-201ENST00000296581 TOMM40LQ969M1 308 aa13.02□□□□□ -0.32
LSM6-201ENST00000296581 DNAJB11Q9UBS4 358 aa13.02□□□□□ -0.32
LSM6-201ENST00000296581 SHPKQ9UHJ6 478 aa13.02□□□□□ -0.32
LSM6-201ENST00000296581 TRAPPC2LQ9UL33 140 aa13.02□□□□□ -0.32
LSM6-201ENST00000296581 HIVEP3Q5T1R4 2406 aa13.02□□□□□ -0.32
LSM6-201ENST00000296581 TRBV6-7A0A0A0MS04 114 aa13.02□□□□□ -0.33
LSM6-201ENST00000296581 NPIPB11E5RHQ5 1161 aa13.02□□□□□ -0.33
LSM6-201ENST00000296581 ZNF737O75373 536 aa13.02□□□□□ -0.33
LSM6-201ENST00000296581 DIRAS3O95661 229 aa13.02□□□□□ -0.33
LSM6-201ENST00000296581 TFF1P04155 84 aa13.02□□□□□ -0.33
LSM6-201ENST00000296581 FOLR2P14207 255 aa13.02□□□□□ -0.33
LSM6-201ENST00000296581 ADCYAP1P18509 176 aa13.02□□□□□ -0.33
LSM6-201ENST00000296581 TNFRSF1AP19438 455 aa13.02□□□□□ -0.33
LSM6-201ENST00000296581 GNLYP22749 145 aa13.02□□□□□ -0.33
LSM6-201ENST00000296581 APOBEC3AP31941 199 aaPredicted RBP13.02□□□□□ -0.33
LSM6-201ENST00000296581 UQCRFS1P47985 274 aa13.02□□□□□ -0.33
LSM6-201ENST00000296581 FXYD4P59646 89 aa13.02□□□□□ -0.33
LSM6-201ENST00000296581 HERV-K104P61576 105 aa13.02□□□□□ -0.33
LSM6-201ENST00000296581 TESK1Q15569 626 aa13.02□□□□□ -0.33
LSM6-201ENST00000296581 HMGN3Q15651 99 aa13.02□□□□□ -0.33
LSM6-201ENST00000296581 SSX2Q16385 188 aa13.02□□□□□ -0.33
LSM6-201ENST00000296581 PIK3IP1Q96FE7 263 aa13.02□□□□□ -0.33
LSM6-201ENST00000296581 COQ2Q96H96 371 aa13.02□□□□□ -0.33
LSM6-201ENST00000296581 RSRP1Q9BUV0 290 aa13.02□□□□□ -0.33
LSM6-201ENST00000296581 OPN4Q9UHM6 478 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms