RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 OR2W1Q9Y3N9 320 aa14.1□□□□□ -0.15
VPS54-201ENST00000272322 TNRC6AQ8NDV7 1962 aaKnown RBP14.1□□□□□ -0.15
VPS54-201ENST00000272322 S100A6P06703 90 aa14.1□□□□□ -0.15
VPS54-201ENST00000272322 WT1P19544 449 aaPredicted RBP14.1□□□□□ -0.15
VPS54-201ENST00000272322 TBC1D28Q2M2D7 210 aa14.1□□□□□ -0.15
VPS54-201ENST00000272322 SOHLH1Q5JUK2 328 aa14.1□□□□□ -0.15
VPS54-201ENST00000272322 MRGPRDQ8TDS7 321 aa14.1□□□□□ -0.15
VPS54-201ENST00000272322 VSIRQ9H7M9 311 aa14.1□□□□□ -0.15
VPS54-201ENST00000272322 NDRG3Q9UGV2 375 aa14.1□□□□□ -0.15
VPS54-201ENST00000272322 PSPNO60542 156 aa14.1□□□□□ -0.15
VPS54-201ENST00000272322 IGHV1-2P23083 117 aa14.1□□□□□ -0.15
VPS54-201ENST00000272322 PSG7Q13046 419 aa14.1□□□□□ -0.15
VPS54-201ENST00000272322 MPV17LQ2QL34 196 aa14.1□□□□□ -0.15
VPS54-201ENST00000272322 GPR157Q5UAW9 335 aa14.1□□□□□ -0.15
VPS54-201ENST00000272322 OR52L2PQ8NGH6 319 aa14.1□□□□□ -0.15
VPS54-201ENST00000272322 PLEKHF2Q9H8W4 249 aa14.1□□□□□ -0.15
VPS54-201ENST00000272322 TAAR3PQ9P1P4 343 aa14.1□□□□□ -0.15
VPS54-201ENST00000272322 ZNF292O60281 2723 aa14.09□□□□□ -0.15
VPS54-201ENST00000272322 PMELP40967 661 aa14.09□□□□□ -0.15
VPS54-201ENST00000272322 RNPS1Q15287 305 aaKnown RBP14.09□□□□□ -0.15
VPS54-201ENST00000272322 AKR1C8PQ5T2L2 129 aa14.09□□□□□ -0.15
VPS54-201ENST00000272322 BCL2L2Q92843 193 aaPredicted RBP14.09□□□□□ -0.15
VPS54-201ENST00000272322 LINC00470Q9BZP3 86 aa14.09□□□□□ -0.15
VPS54-201ENST00000272322 GNG13Q9P2W3 67 aa14.09□□□□□ -0.15
VPS54-201ENST00000272322 C21orf140B9A014 251 aa14.09□□□□□ -0.15
VPS54-201ENST00000272322 SEC11BP0C7V7 166 aa14.09□□□□□ -0.15
VPS54-201ENST00000272322 FLI1Q01543 452 aaPredicted RBP14.09□□□□□ -0.15
VPS54-201ENST00000272322 EIF3IQ13347 325 aaKnown RBP14.09□□□□□ -0.15
VPS54-201ENST00000272322 OR8G1Q15617 311 aa14.09□□□□□ -0.15
VPS54-201ENST00000272322 TMEM9BQ9NQ34 198 aa14.09□□□□□ -0.15
VPS54-201ENST00000272322 ZNF14P17017 642 aaPredicted RBP14.09□□□□□ -0.15
VPS54-201ENST00000272322 ZNF343Q6P1L6 599 aa14.09□□□□□ -0.15
VPS54-201ENST00000272322 RBMS3Q6XE24 437 aaKnown RBP14.09□□□□□ -0.15
VPS54-201ENST00000272322 C12orf57Q99622 126 aa14.09□□□□□ -0.15
VPS54-201ENST00000272322 ATRXP46100 2492 aa14.09□□□□□ -0.15
VPS54-201ENST00000272322 RAMP3O60896 148 aa14.08□□□□□ -0.16
VPS54-201ENST00000272322 UCP3P55916 312 aa14.08□□□□□ -0.16
VPS54-201ENST00000272322 SSX9Q7RTT3 188 aa14.08□□□□□ -0.16
VPS54-201ENST00000272322 SPIN2AQ99865 258 aa14.08□□□□□ -0.16
VPS54-201ENST00000272322 SPIN2BQ9BPZ2 258 aa14.08□□□□□ -0.16
VPS54-201ENST00000272322 OR51I2Q9H344 312 aa14.08□□□□□ -0.16
VPS54-201ENST00000272322 SMCO4Q9NRQ5 59 aa14.08□□□□□ -0.16
VPS54-201ENST00000272322 METRNQ9UJH8 293 aa14.08□□□□□ -0.16
VPS54-201ENST00000272322 COLCA2A8K830 154 aa14.08□□□□□ -0.16
VPS54-201ENST00000272322 SOX15O60248 233 aa14.08□□□□□ -0.16
VPS54-201ENST00000272322 CD55P08174 381 aa14.08□□□□□ -0.16
VPS54-201ENST00000272322 CLEC12BQ2HXU8 276 aa14.08□□□□□ -0.16
VPS54-201ENST00000272322 ODF3L1Q8IXM7 274 aa14.08□□□□□ -0.16
VPS54-201ENST00000272322 ABHD14BQ96IU4 210 aa14.08□□□□□ -0.16
VPS54-201ENST00000272322 GINS3Q9BRX5 216 aa14.08□□□□□ -0.16
VPS54-201ENST00000272322 CHD3Q12873 2000 aaKnown RBP14.08□□□□□ -0.16
VPS54-201ENST00000272322 HLA-DRB3P79483 266 aa14.07□□□□□ -0.16
VPS54-201ENST00000272322 DEFB109BQ30KR1 87 aa14.07□□□□□ -0.16
VPS54-201ENST00000272322 DBX2Q6ZNG2 339 aa14.07□□□□□ -0.16
VPS54-201ENST00000272322 LRTM2Q8N967 370 aa14.07□□□□□ -0.16
VPS54-201ENST00000272322 G6PCP35575 357 aa14.07□□□□□ -0.16
VPS54-201ENST00000272322 SLC16A13Q7RTY0 426 aa14.07□□□□□ -0.16
VPS54-201ENST00000272322 MDS2Q8NDY4 140 aa14.07□□□□□ -0.16
VPS54-201ENST00000272322 TECTBQ96PL2 329 aa14.07□□□□□ -0.16
VPS54-201ENST00000272322 MRPS18CQ9Y3D5 142 aaKnown RBP14.07□□□□□ -0.16
VPS54-201ENST00000272322 COL6A6A6NMZ7 2263 aa14.07□□□□□ -0.16
VPS54-201ENST00000272322 CLDN1O95832 211 aa14.07□□□□□ -0.16
VPS54-201ENST00000272322 IGKV1-39P01597 117 aa14.07□□□□□ -0.16
VPS54-201ENST00000272322 IGKV1D-39P04432 117 aa14.07□□□□□ -0.16
VPS54-201ENST00000272322 S100GP29377 79 aa14.07□□□□□ -0.16
VPS54-201ENST00000272322 IL2RGP31785 369 aa14.07□□□□□ -0.16
VPS54-201ENST00000272322 RND3P61587 244 aa14.07□□□□□ -0.16
VPS54-201ENST00000272322 ARL16Q0P5N6 197 aa14.07□□□□□ -0.16
VPS54-201ENST00000272322 ZNF266Q14584 549 aa14.07□□□□□ -0.16
VPS54-201ENST00000272322 NMSQ5H8A3 153 aa14.07□□□□□ -0.16
VPS54-201ENST00000272322 ZNF324BQ6AW86 544 aaPredicted RBP14.07□□□□□ -0.16
VPS54-201ENST00000272322 CYB561D1Q8N8Q1 229 aa14.07□□□□□ -0.16
VPS54-201ENST00000272322 PLK3Q9H4B4 646 aa14.07□□□□□ -0.16
VPS54-201ENST00000272322 LYRM2Q9NU23 88 aaPredicted RBP14.07□□□□□ -0.16
VPS54-201ENST00000272322 TNCP24821 2201 aa14.07□□□□□ -0.16
VPS54-201ENST00000272322 FAM157AC9JC47 383 aa14.06□□□□□ -0.16
VPS54-201ENST00000272322 MDKP21741 143 aaPredicted RBP14.06□□□□□ -0.16
VPS54-201ENST00000272322 HOXC12P31275 282 aa14.06□□□□□ -0.16
VPS54-201ENST00000272322 SSTR5P35346 364 aa14.06□□□□□ -0.16
VPS54-201ENST00000272322 ZNF528Q3MIS6 628 aa14.06□□□□□ -0.16
VPS54-201ENST00000272322 LILRB2Q8N423 598 aa14.06□□□□□ -0.16
VPS54-201ENST00000272322 RTL8AQ9BWD3 113 aa14.06□□□□□ -0.16
VPS54-201ENST00000272322 TNRC6BQ9UPQ9 1833 aaKnown RBP14.06□□□□□ -0.16
VPS54-201ENST00000272322 LINC01387J3KSC0 135 aa14.06□□□□□ -0.16
VPS54-201ENST00000272322 TIMM8AO60220 97 aaPredicted RBP14.06□□□□□ -0.16
VPS54-201ENST00000272322 SMPD2O60906 423 aa14.06□□□□□ -0.16
VPS54-201ENST00000272322 RD3LP0DJH9 198 aa14.06□□□□□ -0.16
VPS54-201ENST00000272322 UCP1P25874 307 aa14.06□□□□□ -0.16
VPS54-201ENST00000272322 PAX9P55771 341 aa14.06□□□□□ -0.16
VPS54-201ENST00000272322 STX12Q86Y82 276 aa14.06□□□□□ -0.16
VPS54-201ENST00000272322 LINC00518Q8N0U6 118 aa14.06□□□□□ -0.16
VPS54-201ENST00000272322 KLF14Q8TD94 323 aaPredicted RBP14.06□□□□□ -0.16
VPS54-201ENST00000272322 HIST1H2BAQ96A08 127 aa14.06□□□□□ -0.16
VPS54-201ENST00000272322 TMEM56Q96MV1 263 aa14.06□□□□□ -0.16
VPS54-201ENST00000272322 OR2D2Q9H210 308 aa14.06□□□□□ -0.16
VPS54-201ENST00000272322 KPTNQ9Y664 436 aa14.06□□□□□ -0.16
VPS54-201ENST00000272322 TMEM56-RWDD3S4R434 201 aa14.06□□□□□ -0.16
VPS54-201ENST00000272322 ZNF806P0C7X5 589 aa14.06□□□□□ -0.16
VPS54-201ENST00000272322 NQO2P16083 231 aa14.06□□□□□ -0.16
VPS54-201ENST00000272322 SULT1A1P50225 295 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms