RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 SNRPCP09234 159 aaKnown RBP10.82□□□□□ -0.68
LIG1-201ENST00000263274 CDX1P47902 265 aaPredicted RBP10.82□□□□□ -0.68
LIG1-201ENST00000263274 GNG10P50151 68 aa10.82□□□□□ -0.68
LIG1-201ENST00000263274 ABHD17BQ5VST6 288 aa10.82□□□□□ -0.68
LIG1-201ENST00000263274 C20orf204Q6ZNR8 217 aa10.82□□□□□ -0.68
LIG1-201ENST00000263274 CLDN23Q96B33 292 aa10.82□□□□□ -0.68
LIG1-201ENST00000263274 PSENENQ9NZ42 101 aa10.82□□□□□ -0.68
LIG1-201ENST00000263274 KIAA1456Q9P272 454 aa10.82□□□□□ -0.68
LIG1-201ENST00000263274 TCFL5Q9UL49 500 aa10.82□□□□□ -0.68
LIG1-201ENST00000263274 SELEP16581 610 aa10.81□□□□□ -0.68
LIG1-201ENST00000263274 CD200P41217 278 aa10.81□□□□□ -0.68
LIG1-201ENST00000263274 Q0VFX4 171 aa10.81□□□□□ -0.68
LIG1-201ENST00000263274 DCAF12Q5T6F0 453 aa10.81□□□□□ -0.68
LIG1-201ENST00000263274 GFI1BQ5VTD9 330 aa10.81□□□□□ -0.68
LIG1-201ENST00000263274 TMEM42Q69YG0 159 aa10.81□□□□□ -0.68
LIG1-201ENST00000263274 ZNF880Q6PDB4 577 aa10.81□□□□□ -0.68
LIG1-201ENST00000263274 ZNF610Q8N9Z0 462 aa10.81□□□□□ -0.68
LIG1-201ENST00000263274 EGLN1Q9GZT9 426 aa10.81□□□□□ -0.68
LIG1-201ENST00000263274 PRDM13Q9H4Q3 707 aa10.81□□□□□ -0.68
LIG1-201ENST00000263274 VSIRQ9H7M9 311 aa10.81□□□□□ -0.68
LIG1-201ENST00000263274 COL5A1P20908 1838 aaPredicted RBP10.81□□□□□ -0.68
LIG1-201ENST00000263274 RAC2P15153 192 aa10.81□□□□□ -0.68
LIG1-201ENST00000263274 ERVFRD-1P60508 538 aa10.81□□□□□ -0.68
LIG1-201ENST00000263274 FGF12P61328 243 aa10.81□□□□□ -0.68
LIG1-201ENST00000263274 ZXDAP98168 799 aa10.81□□□□□ -0.68
LIG1-201ENST00000263274 OR8B8Q15620 311 aa10.81□□□□□ -0.68
LIG1-201ENST00000263274 ADIRFQ15847 76 aa10.81□□□□□ -0.68
LIG1-201ENST00000263274 ZNF808Q8N4W9 903 aaPredicted RBP10.81□□□□□ -0.68
LIG1-201ENST00000263274 RPRMQ9NS64 109 aa10.81□□□□□ -0.68
LIG1-201ENST00000263274 ZNF391Q9UJN7 358 aa10.81□□□□□ -0.68
LIG1-201ENST00000263274 LOC400499M0QZD8 3231 aa10.81□□□□□ -0.68
LIG1-201ENST00000263274 TECTAO75443 2155 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 IGKV1-6A0A0C4DH72 117 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 RHBDL1O75783 438 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 CLDN1O95832 211 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 GRPP07492 148 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 HIST1H1BP16401 226 aaKnown RBP10.8□□□□□ -0.68
LIG1-201ENST00000263274 F2RP25116 425 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 APLNRP35414 380 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 MAGEA5P43359 124 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 ICAM4Q14773 271 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 HIKESHIQ53FT3 197 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 SPNS3Q6ZMD2 512 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 SNIP1Q8TAD8 396 aaKnown RBP10.8□□□□□ -0.68
LIG1-201ENST00000263274 DTD1Q8TEA8 209 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 RBMXL1Q96E39 390 aaKnown RBP10.8□□□□□ -0.68
LIG1-201ENST00000263274 TAAR9Q96RI9 348 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 ATP5SQ99766 215 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 BOKQ9UMX3 212 aaPredicted RBP10.8□□□□□ -0.68
LIG1-201ENST00000263274 LRRC3CA6NJW4 275 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 ZNF705GA8MUZ8 300 aaPredicted RBP10.8□□□□□ -0.68
LIG1-201ENST00000263274 HBE1P02100 147 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 HOXA5P20719 270 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 DUSP3P51452 185 aaPredicted RBP10.8□□□□□ -0.68
LIG1-201ENST00000263274 GTF3C1Q12789 2109 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 CXorf67Q86X51 503 aaPredicted RBP10.8□□□□□ -0.68
LIG1-201ENST00000263274 APH1AQ96BI3 265 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 RPUSD4Q96CM3 377 aaKnown RBP10.8□□□□□ -0.68
LIG1-201ENST00000263274 PLPPR2Q96GM1 343 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 TUBA4BQ9H853 241 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 USF3Q68DE3 2245 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 BMP5P22003 454 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 PKIAP61925 76 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 SPINK9Q5DT21 86 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 HEPN1Q6WQI6 88 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 PPP1R32Q7Z5V6 425 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 FAM58AQ8N1B3 248 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 APOBEC3DQ96AK3 386 aaPredicted RBP10.8□□□□□ -0.68
LIG1-201ENST00000263274 MUCL1Q96DR8 90 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 PILRBQ9UKJ0 227 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 ATP23Q9Y6H3 246 aa10.8□□□□□ -0.68
LIG1-201ENST00000263274 MED13Q9UHV7 2174 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 UBE2L5PA0A1B0GUS4 154 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 DFFBO76075 338 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 KRASP01116 189 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 PAX6P26367 422 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 HLA-DRB3P79483 266 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 LTC4SQ16873 150 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 ASCL4Q6XD76 172 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 FGF23Q9GZV9 251 aaPredicted RBP10.79□□□□□ -0.68
LIG1-201ENST00000263274 ZNF503-AS2A6NEH8 195 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 MMP7P09237 267 aaPredicted RBP10.79□□□□□ -0.68
LIG1-201ENST00000263274 TAS2R30P59541 319 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 CEACAM21Q3KPI0 293 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 PMS2CLQ68D20 193 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 Q6ZRM9 215 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 CT55Q8WUE5 264 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 TMEM56Q96MV1 263 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 SLC39A9Q9NUM3 307 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 OR2W1Q9Y3N9 320 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 TMEM56-RWDD3S4R434 201 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 UCP1P25874 307 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 ID3Q02535 119 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 IL24Q13007 206 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 SIGLEC12Q96PQ1 595 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 REPIN1Q9BWE0 567 aaKnown RBP10.79□□□□□ -0.68
LIG1-201ENST00000263274 C1QTNF5Q9BXJ0 243 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 DEFB127Q9H1M4 99 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 GAB2Q9UQC2 676 aa10.79□□□□□ -0.68
LIG1-201ENST00000263274 IFITM10A6NMD0 228 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms