RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 RAB3CQ96E17 227 aa14.73□□□□□ -0.05
CLN3-243ENST00000635973 CYYR1Q96J86 154 aa14.73□□□□□ -0.05
CLN3-243ENST00000635973 PECRQ9BY49 303 aa14.73□□□□□ -0.05
CLN3-243ENST00000635973 CHIAQ9BZP6 476 aa14.73□□□□□ -0.05
CLN3-243ENST00000635973 KCNIP1Q9NZI2 227 aa14.73□□□□□ -0.05
CLN3-243ENST00000635973 AK3Q9UIJ7 227 aa14.73□□□□□ -0.05
CLN3-243ENST00000635973 HSF4Q9ULV5 492 aa14.73□□□□□ -0.05
CLN3-243ENST00000635973 ETV7Q9Y603 341 aa14.73□□□□□ -0.05
CLN3-243ENST00000635973 SPINT2O43291 252 aa14.72□□□□□ -0.05
CLN3-243ENST00000635973 TMEM127O75204 238 aa14.72□□□□□ -0.05
CLN3-243ENST00000635973 FBP1P09467 338 aa14.72□□□□□ -0.05
CLN3-243ENST00000635973 GDNFP39905 211 aa14.72□□□□□ -0.05
CLN3-243ENST00000635973 SCAND1P57086 179 aa14.72□□□□□ -0.05
CLN3-243ENST00000635973 MOGAT2Q3SYC2 334 aa14.72□□□□□ -0.05
CLN3-243ENST00000635973 BAIAP2L2Q6UXY1 529 aa14.72□□□□□ -0.05
CLN3-243ENST00000635973 ABHD12Q8N2K0 398 aa14.72□□□□□ -0.05
CLN3-243ENST00000635973 OR10R2Q8NGX6 335 aa14.72□□□□□ -0.05
CLN3-243ENST00000635973 UBALD1Q8TB05 177 aa14.72□□□□□ -0.05
CLN3-243ENST00000635973 SLC25A46Q96AG3 418 aa14.72□□□□□ -0.05
CLN3-243ENST00000635973 PHF21AQ96BD5 680 aa14.72□□□□□ -0.05
CLN3-243ENST00000635973 KIRREL1Q96J84 757 aa14.72□□□□□ -0.05
CLN3-243ENST00000635973 MMP24Q9Y5R2 645 aa14.72□□□□□ -0.05
CLN3-243ENST00000635973 FOXI3A8MTJ6 420 aaPredicted RBP14.71□□□□□ -0.05
CLN3-243ENST00000635973 TOR1AO14656 332 aa14.71□□□□□ -0.05
CLN3-243ENST00000635973 ORC5O43913 435 aa14.71□□□□□ -0.05
CLN3-243ENST00000635973 SCGNO76038 276 aa14.71□□□□□ -0.05
CLN3-243ENST00000635973 CGB3P0DN86 165 aa14.71□□□□□ -0.05
CLN3-243ENST00000635973 CGB7P0DN87 165 aa14.71□□□□□ -0.05
CLN3-243ENST00000635973 CTF1Q16619 201 aa14.71□□□□□ -0.05
CLN3-243ENST00000635973 GAPTQ8N292 157 aa14.71□□□□□ -0.05
CLN3-243ENST00000635973 OR11H6Q8NGC7 330 aa14.71□□□□□ -0.05
CLN3-243ENST00000635973 CMSS1Q9BQ75 279 aaKnown RBP14.71□□□□□ -0.05
CLN3-243ENST00000635973 DPAGT1Q9H3H5 408 aa14.71□□□□□ -0.05
CLN3-243ENST00000635973 RIMS4Q9H426 269 aaPredicted RBP14.71□□□□□ -0.05
CLN3-243ENST00000635973 C12orf4Q9NQ89 552 aa14.71□□□□□ -0.05
CLN3-243ENST00000635973 RHBDL2Q9NX52 303 aa14.71□□□□□ -0.05
CLN3-243ENST00000635973 ABRACLQ9P1F3 81 aa14.71□□□□□ -0.05
CLN3-243ENST00000635973 BTBD17A6NE02 478 aa14.7□□□□□ -0.06
CLN3-243ENST00000635973 C12orf77C9JDV5 145 aa14.7□□□□□ -0.06
CLN3-243ENST00000635973 NPIPB11E5RHQ5 1161 aa14.7□□□□□ -0.06
CLN3-243ENST00000635973 SDCBPO00560 298 aaPredicted RBP14.7□□□□□ -0.06
CLN3-243ENST00000635973 CD3GP09693 182 aa14.7□□□□□ -0.06
CLN3-243ENST00000635973 HIST1H1DP16402 221 aaKnown RBP14.7□□□□□ -0.06
CLN3-243ENST00000635973 GNB3P16520 340 aa14.7□□□□□ -0.06
CLN3-243ENST00000635973 RCC1P18754 421 aaPredicted RBP14.7□□□□□ -0.06
CLN3-243ENST00000635973 TMEM50BP56557 158 aa14.7□□□□□ -0.06
CLN3-243ENST00000635973 RPL15P61313 204 aaKnown RBP14.7□□□□□ -0.06
CLN3-243ENST00000635973 PLAC9Q5JTB6 97 aa14.7□□□□□ -0.06
CLN3-243ENST00000635973 ZNF626Q68DY1 528 aa14.7□□□□□ -0.06
CLN3-243ENST00000635973 TREML4Q6UXN2 200 aa14.7□□□□□ -0.06
CLN3-243ENST00000635973 OR10A7Q8NGE5 316 aa14.7□□□□□ -0.06
CLN3-243ENST00000635973 OR5H6Q8NGV6 325 aa14.7□□□□□ -0.06
CLN3-243ENST00000635973 NDNFQ8TB73 568 aa14.7□□□□□ -0.06
CLN3-243ENST00000635973 ZNF596Q8TC21 504 aa14.7□□□□□ -0.06
CLN3-243ENST00000635973 DCSTAMPQ9H295 470 aa14.7□□□□□ -0.06
CLN3-243ENST00000635973 TAF9BQ9HBM6 251 aa14.7□□□□□ -0.06
CLN3-243ENST00000635973 ZNF286AQ9HBT8 521 aa14.7□□□□□ -0.06
CLN3-243ENST00000635973 TBL2Q9Y4P3 447 aaKnown RBP14.7□□□□□ -0.06
CLN3-243ENST00000635973 ODF3BA8MYP8 253 aa14.69□□□□□ -0.06
CLN3-243ENST00000635973 C15orf65H3BRN8 121 aa14.69□□□□□ -0.06
CLN3-243ENST00000635973 RAB27BO00194 218 aa14.69□□□□□ -0.06
CLN3-243ENST00000635973 KCNAB3O43448 404 aa14.69□□□□□ -0.06
CLN3-243ENST00000635973 HBZP02008 142 aa14.69□□□□□ -0.06
CLN3-243ENST00000635973 GNG10P50151 68 aa14.69□□□□□ -0.06
CLN3-243ENST00000635973 ARFRP1Q13795 201 aa14.69□□□□□ -0.06
CLN3-243ENST00000635973 ARL6IP1Q15041 203 aa14.69□□□□□ -0.06
CLN3-243ENST00000635973 OLFML2AQ68BL7 652 aa14.69□□□□□ -0.06
CLN3-243ENST00000635973 MOB1BQ7L9L4 216 aa14.69□□□□□ -0.06
CLN3-243ENST00000635973 RAB2BQ8WUD1 216 aa14.69□□□□□ -0.06
CLN3-243ENST00000635973 HDHD3Q9BSH5 251 aaPredicted RBP14.69□□□□□ -0.06
CLN3-243ENST00000635973 LINC00574Q9H8X3 128 aa14.69□□□□□ -0.06
CLN3-243ENST00000635973 MBNL3Q9NUK0 354 aaKnown RBP14.69□□□□□ -0.06
CLN3-243ENST00000635973 C1RLQ9NZP8 487 aa14.69□□□□□ -0.06
CLN3-243ENST00000635973 GNG12Q9UBI6 72 aa14.69□□□□□ -0.06
CLN3-243ENST00000635973 SPATA2Q9UM82 520 aa14.69□□□□□ -0.06
CLN3-243ENST00000635973 IGHV3-43A0A0B4J1X8 118 aa14.68□□□□□ -0.06
CLN3-243ENST00000635973 CLPSL1A2RUU4 121 aa14.68□□□□□ -0.06
CLN3-243ENST00000635973 SERPINE3A8MV23 424 aa14.68□□□□□ -0.06
CLN3-243ENST00000635973 NDUFA7O95182 113 aa14.68□□□□□ -0.06
CLN3-243ENST00000635973 NAPSAO96009 420 aa14.68□□□□□ -0.06
CLN3-243ENST00000635973 IGHV3-7P01780 117 aa14.68□□□□□ -0.06
CLN3-243ENST00000635973 IGHV4-59P01825 116 aa14.68□□□□□ -0.06
CLN3-243ENST00000635973 IGHV3-43DP0DP04 118 aa14.68□□□□□ -0.06
CLN3-243ENST00000635973 RORCP51449 518 aa14.68□□□□□ -0.06
CLN3-243ENST00000635973 PRRX1P54821 245 aa14.68□□□□□ -0.06
CLN3-243ENST00000635973 TMEM30BQ3MIR4 351 aa14.68□□□□□ -0.06
CLN3-243ENST00000635973 LHFPL4Q7Z7J7 247 aa14.68□□□□□ -0.06
CLN3-243ENST00000635973 ZNF554Q86TJ5 538 aa14.68□□□□□ -0.06
CLN3-243ENST00000635973 OR9G1Q8NH87 305 aa14.68□□□□□ -0.06
CLN3-243ENST00000635973 OR1L1Q8NH94 360 aa14.68□□□□□ -0.06
CLN3-243ENST00000635973 C17orf50Q8WW18 174 aa14.68□□□□□ -0.06
CLN3-243ENST00000635973 LEAP2Q969E1 77 aa14.68□□□□□ -0.06
CLN3-243ENST00000635973 ZNRD1Q9P1U0 126 aa14.68□□□□□ -0.06
CLN3-243ENST00000635973 A0A087X0M5 115 aa14.67□□□□□ -0.06
CLN3-243ENST00000635973 A0A1B0GX30 115 aa14.67□□□□□ -0.06
CLN3-243ENST00000635973 MFNGO00587 321 aa14.67□□□□□ -0.06
CLN3-243ENST00000635973 GPR137BO60478 399 aa14.67□□□□□ -0.06
CLN3-243ENST00000635973 HTR1DP28221 377 aa14.67□□□□□ -0.06
CLN3-243ENST00000635973 CD34P28906 385 aa14.67□□□□□ -0.06
CLN3-243ENST00000635973 TALDO1P37837 337 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms